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  5. Zm00001e041779_P001

Zm00001e041779_P001


Description : Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica (sp|q7xtv7|hip1_orysj : 853.0)


Gene families : OG0000125 (Archaeplastida) Phylogenetic Tree(s): OG0000125_tree ,
OG_05_0000151 (LandPlants) Phylogenetic Tree(s): OG_05_0000151_tree ,
OG_06_0000175 (SeedPlants) Phylogenetic Tree(s): OG_06_0000175_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e041779_P001
Cluster HCCA: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
AT3G15070 No alias RING/U-box superfamily protein 0.03 Archaeplastida
LOC_Os09g36460.1 No alias E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis... 0.04 Archaeplastida
MA_10426661g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10428085g0030 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c5_17300V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 607 648
No external refs found!