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  5. AT3G56550

AT3G56550


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0027242 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0026835 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0025280 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G56550
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01031345001 No alias Pentatricopeptide repeat-containing protein At3g56550... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000002 mitochondrial genome maintenance IEP Neighborhood
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006264 mitochondrial DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007005 mitochondrion organization IEP Neighborhood
BP GO:0007276 gamete generation IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0009432 SOS response IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0010252 auxin homeostasis IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
BP GO:0031590 wybutosine metabolic process IEP Neighborhood
BP GO:0031591 wybutosine biosynthetic process IEP Neighborhood
BP GO:0032042 mitochondrial DNA metabolic process IEP Neighborhood
BP GO:0032875 regulation of DNA endoreduplication IEP Neighborhood
BP GO:0033258 plastid DNA metabolic process IEP Neighborhood
BP GO:0033259 plastid DNA replication IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 273 319
IPR002885 Pentatricopeptide_repeat 172 219
IPR032867 DYW_dom 446 570
IPR002885 Pentatricopeptide_repeat 146 171
IPR002885 Pentatricopeptide_repeat 348 368
No external refs found!