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  5. Zm00001e042040_P001

Zm00001e042040_P001


Description : no hits & (original description: none)


Gene families : OG0001479 (Archaeplastida) Phylogenetic Tree(s): OG0001479_tree ,
OG_05_0001081 (LandPlants) Phylogenetic Tree(s): OG_05_0001081_tree ,
OG_06_0001102 (SeedPlants) Phylogenetic Tree(s): OG_06_0001102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e042040_P001
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00108130 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.04 Archaeplastida
AMTR_s00145p00090170 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.02 Archaeplastida
AMTR_s00626p00011520 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase subunit beta OS=Morus indica 0.04 Archaeplastida
AMTR_s01499p00009870 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.02 Archaeplastida
ATCG00190 RPOB RNA polymerase subunit beta 0.09 Archaeplastida
Gb_02251 No alias RpoB core component plastid-encoded RNA polymerase 0.03 Archaeplastida
Gb_06830 No alias DNA-directed RNA polymerase subunit beta OS=Pinus... 0.03 Archaeplastida
Gb_09029 No alias DNA-directed RNA polymerase subunit beta OS=Cycas... 0.03 Archaeplastida
LOC_Os04g16820.1 No alias RpoB core component plastid-encoded RNA polymerase 0.06 Archaeplastida
LOC_Os05g22830.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.08 Archaeplastida
LOC_Os05g22860.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.09 Archaeplastida
Mp1g13170.1 No alias DNA-directed RNA polymerase subunit beta OS=Marchantia... 0.03 Archaeplastida
Mp6g01430.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp6g21490.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc00g500053.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.05 Archaeplastida
Solyc01g095950.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.05 Archaeplastida
Solyc02g067590.2.1 No alias DNA-directed RNA polymerase subunit beta OS=Liriodendron... 0.05 Archaeplastida
Solyc10g017920.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.06 Archaeplastida
Solyc12g035790.2.1 No alias regulatory component YCF2 of AAA-ATPase motor complex 0.06 Archaeplastida
Solyc12g035870.3.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.06 Archaeplastida
Zm00001e042170_P001 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!