Description : no hits & (original description: none)
Gene families : OG0003076 (Archaeplastida) Phylogenetic Tree(s): OG0003076_tree ,
OG_05_0002303 (LandPlants) Phylogenetic Tree(s): OG_05_0002303_tree ,
OG_06_0001676 (SeedPlants) Phylogenetic Tree(s): OG_06_0001676_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e042064_P001 | |
Cluster | HCCA: Cluster_255 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
ATCG00740 | RPOA | RNA polymerase subunit alpha | 0.06 | Archaeplastida | |
Gb_17282 | No alias | DNA-directed RNA polymerase subunit alpha OS=Cycas... | 0.05 | Archaeplastida | |
Gb_25929 | No alias | DNA-directed RNA polymerase subunit alpha OS=Cycas... | 0.03 | Archaeplastida | |
Gb_36750 | No alias | RpoA core component plastid-encoded RNA polymerase | 0.05 | Archaeplastida | |
LOC_Os04g16842.1 | No alias | RpoA core component plastid-encoded RNA polymerase | 0.18 | Archaeplastida | |
LOC_Os06g39700.1 | No alias | RpoA core component plastid-encoded RNA polymerase | 0.16 | Archaeplastida | |
LOC_Os09g07910.1 | No alias | DNA-directed RNA polymerase subunit alpha OS=Oryza... | 0.04 | Archaeplastida | |
Mpzg00720.1 | No alias | RpoA core component plastid-encoded RNA polymerase | 0.05 | Archaeplastida | |
Solyc00g500029.1.1 | No alias | DNA-directed RNA polymerase subunit alpha OS=Solanum... | 0.04 | Archaeplastida | |
Solyc00g500074.1.1 | No alias | DNA-directed RNA polymerase subunit alpha OS=Solanum... | 0.04 | Archaeplastida | |
Solyc00g500157.1.1 | No alias | RpoA core component plastid-encoded RNA polymerase | 0.08 | Archaeplastida | |
Solyc01g017440.1.1 | No alias | DNA-directed RNA polymerase subunit alpha OS=Solanum... | 0.11 | Archaeplastida | |
Solyc08g081560.1.1 | No alias | DNA-directed RNA polymerase subunit alpha OS=Nicotiana... | 0.03 | Archaeplastida | |
Solyc12g035890.3.1 | No alias | DNA-directed RNA polymerase subunit alpha OS=Solanum... | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000287 | magnesium ion binding | IEP | Neighborhood |
MF | GO:0003674 | molecular_function | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
CC | GO:0005840 | ribosome | IEP | Neighborhood |
BP | GO:0006412 | translation | IEP | Neighborhood |
BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0008150 | biological_process | IEP | Neighborhood |
BP | GO:0008152 | metabolic process | IEP | Neighborhood |
BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0009987 | cellular process | IEP | Neighborhood |
BP | GO:0015977 | carbon fixation | IEP | Neighborhood |
MF | GO:0016829 | lyase activity | IEP | Neighborhood |
MF | GO:0016830 | carbon-carbon lyase activity | IEP | Neighborhood |
MF | GO:0016831 | carboxy-lyase activity | IEP | Neighborhood |
MF | GO:0016984 | ribulose-bisphosphate carboxylase activity | IEP | Neighborhood |
BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
MF | GO:0043169 | cation binding | IEP | Neighborhood |
BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
CC | GO:0043226 | organelle | IEP | Neighborhood |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
MF | GO:0048037 | cofactor binding | IEP | Neighborhood |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | Neighborhood |
MF | GO:0051540 | metal cluster binding | IEP | Neighborhood |
BP | GO:0055114 | oxidation-reduction process | IEP | Neighborhood |
BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No InterPro domains available for this sequence
No external refs found! |