Zm00001e042064_P001


Description : no hits & (original description: none)


Gene families : OG0003076 (Archaeplastida) Phylogenetic Tree(s): OG0003076_tree ,
OG_05_0002303 (LandPlants) Phylogenetic Tree(s): OG_05_0002303_tree ,
OG_06_0001676 (SeedPlants) Phylogenetic Tree(s): OG_06_0001676_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e042064_P001
Cluster HCCA: Cluster_255

Target Alias Description ECC score Gene Family Method Actions
ATCG00740 RPOA RNA polymerase subunit alpha 0.06 Archaeplastida
Gb_17282 No alias DNA-directed RNA polymerase subunit alpha OS=Cycas... 0.05 Archaeplastida
Gb_25929 No alias DNA-directed RNA polymerase subunit alpha OS=Cycas... 0.03 Archaeplastida
Gb_36750 No alias RpoA core component plastid-encoded RNA polymerase 0.05 Archaeplastida
LOC_Os04g16842.1 No alias RpoA core component plastid-encoded RNA polymerase 0.18 Archaeplastida
LOC_Os06g39700.1 No alias RpoA core component plastid-encoded RNA polymerase 0.16 Archaeplastida
LOC_Os09g07910.1 No alias DNA-directed RNA polymerase subunit alpha OS=Oryza... 0.04 Archaeplastida
Mpzg00720.1 No alias RpoA core component plastid-encoded RNA polymerase 0.05 Archaeplastida
Solyc00g500029.1.1 No alias DNA-directed RNA polymerase subunit alpha OS=Solanum... 0.04 Archaeplastida
Solyc00g500074.1.1 No alias DNA-directed RNA polymerase subunit alpha OS=Solanum... 0.04 Archaeplastida
Solyc00g500157.1.1 No alias RpoA core component plastid-encoded RNA polymerase 0.08 Archaeplastida
Solyc01g017440.1.1 No alias DNA-directed RNA polymerase subunit alpha OS=Solanum... 0.11 Archaeplastida
Solyc08g081560.1.1 No alias DNA-directed RNA polymerase subunit alpha OS=Nicotiana... 0.03 Archaeplastida
Solyc12g035890.3.1 No alias DNA-directed RNA polymerase subunit alpha OS=Solanum... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!