- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : no hits & (original description: none)
Gene families : OG0001479 (Archaeplastida) Phylogenetic Tree(s): OG0001479_tree ,
OG_05_0001081 (LandPlants) Phylogenetic Tree(s): OG_05_0001081_tree ,
OG_06_0001102 (SeedPlants) Phylogenetic Tree(s): OG_06_0001102_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e042170_P001 | |
| Cluster | HCCA: Cluster_109 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00102p00108130 | evm_27.TU.AmTr_v1... | DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda | 0.06 | Archaeplastida | |
| AMTR_s00145p00090170 | evm_27.TU.AmTr_v1... | DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda | 0.05 | Archaeplastida | |
| AMTR_s00626p00011520 | evm_27.TU.AmTr_v1... | DNA-directed RNA polymerase subunit beta OS=Morus indica | 0.06 | Archaeplastida | |
| AMTR_s01499p00009870 | evm_27.TU.AmTr_v1... | DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda | 0.05 | Archaeplastida | |
| ATCG00190 | RPOB | RNA polymerase subunit beta | 0.06 | Archaeplastida | |
| LOC_Os04g16820.1 | No alias | RpoB core component plastid-encoded RNA polymerase | 0.02 | Archaeplastida | |
| LOC_Os05g22830.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Oryza sativa... | 0.02 | Archaeplastida | |
| LOC_Os05g22860.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Oryza sativa... | 0.05 | Archaeplastida | |
| Solyc00g500053.1.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Nicotiana... | 0.02 | Archaeplastida | |
| Solyc01g095950.1.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Solanum... | 0.02 | Archaeplastida | |
| Solyc02g067590.2.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Liriodendron... | 0.02 | Archaeplastida | |
| Solyc10g017920.1.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Solanum... | 0.02 | Archaeplastida | |
| Solyc12g035790.2.1 | No alias | regulatory component YCF2 of AAA-ATPase motor complex | 0.02 | Archaeplastida | |
| Solyc12g035870.3.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Solanum... | 0.02 | Archaeplastida | |
| Zm00001e042040_P001 | No alias | no hits & (original description: none) | 0.05 | Archaeplastida | |
| Zm00001e042070_P001 | No alias | no hits & (original description: none) | 0.05 | Archaeplastida | |
| Zm00001e042106_P001 | No alias | no hits & (original description: none) | 0.05 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| CC | GO:0009539 | photosystem II reaction center | IEP | Neighborhood |
| CC | GO:0009579 | thylakoid | IEP | Neighborhood |
| BP | GO:0009767 | photosynthetic electron transport chain | IEP | Neighborhood |
| BP | GO:0009772 | photosynthetic electron transport in photosystem II | IEP | Neighborhood |
| MF | GO:0015002 | heme-copper terminal oxidase activity | IEP | Neighborhood |
| BP | GO:0015979 | photosynthesis | IEP | Neighborhood |
| BP | GO:0019684 | photosynthesis, light reaction | IEP | Neighborhood |
| MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
| BP | GO:0022900 | electron transport chain | IEP | Neighborhood |
| MF | GO:0045156 | electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |