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  5. Mp1g05510.1

Mp1g05510.1


Description : RNA helicase component SKI2 of SUPERKILLER (SKI) regulation complex


Gene families : OG0000933 (Archaeplastida) Phylogenetic Tree(s): OG0000933_tree ,
OG_05_0006636 (LandPlants) Phylogenetic Tree(s): OG_05_0006636_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g05510.1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00200390 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.03 Archaeplastida
AMTR_s00029p00206820 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.03 Archaeplastida
AT1G59760 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.04 Archaeplastida
AT3G46960 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.04 Archaeplastida
Cpa|evm.model.tig00001155.2 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.01 Archaeplastida
Cre02.g117900 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
Cre06.g289950 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 Archaeplastida
Cre11.g482483 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 Archaeplastida
GSVIVT01037437001 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 Archaeplastida
Gb_23155 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 Archaeplastida
Gb_30711 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.02 Archaeplastida
Gb_37921 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.02 Archaeplastida
LOC_Os02g06500.1 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.05 Archaeplastida
MA_10437134g0010 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.05 Archaeplastida
Pp3c10_7310V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Archaeplastida
Pp3c20_11040V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Archaeplastida
Smo79650 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
Solyc01g103080.3.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.03 Archaeplastida
Solyc05g047520.4.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.05 Archaeplastida
Solyc06g005990.4.1 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.02 Archaeplastida
Solyc12g017860.3.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.03 Archaeplastida
Zm00001e013693_P002 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.03 Archaeplastida
Zm00001e025923_P001 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 Archaeplastida
Zm00001e036710_P004 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005672 transcription factor TFIIA complex IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006623 protein targeting to vacuole IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0016972 thiol oxidase activity IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072665 protein localization to vacuole IEP Neighborhood
BP GO:0072666 establishment of protein localization to vacuole IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR012961 Ski2_C 1183 1353
IPR025696 rRNA_proc-arch_dom 848 1155
IPR011545 DEAD/DEAH_box_helicase_dom 370 515
No external refs found!