Mp1g12750.1

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000516 (LandPlants) Phylogenetic Tree(s): OG_05_0000516_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp1g12750.1
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00157690	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AT1G19220	ARF19, IAA22, ARF11	auxin response factor 19	0.02	Archaeplastida
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.02	Archaeplastida
AT2G33860	ARF3, ETT	Transcriptional factor B3 family protein /...	0.02	Archaeplastida
AT5G20730	TIR5, MSG1,...	Transcriptional factor B3 family protein /...	0.02	Archaeplastida
AT5G62000	HSS, ARF1-BP, ARF2, ORE14	auxin response factor 2	0.02	Archaeplastida
GSVIVT01004942001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01015035001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.01	Archaeplastida
GSVIVT01019566001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
GSVIVT01020805001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
GSVIVT01021128001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
GSVIVT01021552001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
GSVIVT01025159001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01025691001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
GSVIVT01035204001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01035205001	No alias	Auxin response factor 12 OS=Oryza sativa subsp. japonica	0.02	Archaeplastida
GSVIVT01037136001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
Gb_12414	No alias	transcription factor (ARF)	0.01	Archaeplastida
Gb_23186	No alias	transcription factor (ARF)	0.02	Archaeplastida
Gb_23328	No alias	transcription factor (ARF)	0.01	Archaeplastida
Gb_32404	No alias	transcription factor (ARF)	0.01	Archaeplastida
Gb_32864	No alias	transcription factor (ARF)	0.05	Archaeplastida
Gb_39685	No alias	transcription factor (ARF)	0.02	Archaeplastida
Gb_39686	No alias	transcription factor (ARF)	0.05	Archaeplastida
LOC_Os02g35140.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os04g57610.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
LOC_Os12g41950.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
MA_10022392g0010	No alias	transcription factor (ARF)	0.02	Archaeplastida
MA_103763g0010	No alias	Auxin response factor 6 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Pp3c13_4720V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Pp3c26_11550V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Solyc07g016180.3.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
Solyc09g007810.4.1	No alias	transcription factor (ARF)	0.01	Archaeplastida
Zm00001e003229_P002	No alias	transcription factor (ARF)	0.02	Archaeplastida
Zm00001e006577_P003	No alias	transcription factor (ARF)	0.02	Archaeplastida
Zm00001e006640_P002	No alias	transcription factor (ARF)	0.02	Archaeplastida
Zm00001e014833_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e028396_P001	No alias	transcription factor (ARF)	0.02	Archaeplastida
Zm00001e030290_P005	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e041866_P001	No alias	transcription factor (ARF)	0.02	Archaeplastida
Zm00001e041910_P003	No alias	transcription factor (ARF)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	IEP	Neighborhood
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Neighborhood
MF	GO:0004177	aminopeptidase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006401	RNA catabolic process	IEP	Neighborhood
BP	GO:0006402	mRNA catabolic process	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0007030	Golgi organization	IEP	Neighborhood
MF	GO:0008374	O-acyltransferase activity	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
MF	GO:0030145	manganese ion binding	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0043085	positive regulation of catalytic activity	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044093	positive regulation of molecular function	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Neighborhood
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Neighborhood
MF	GO:0071949	FAD binding	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	134	238
IPR010525	Auxin_resp	263	346
IPR033389	AUX/IAA_dom	806	882

External Links

No external refs found!

Mp1g12750.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation