AT3G58510


Description : DEA(D/H)-box RNA helicase family protein


Gene families : OG0002046 (Archaeplastida) Phylogenetic Tree(s): OG0002046_tree ,
OG_05_0001832 (LandPlants) Phylogenetic Tree(s): OG_05_0001832_tree ,
OG_06_0001913 (SeedPlants) Phylogenetic Tree(s): OG_06_0001913_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G58510
Cluster HCCA: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00136740 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT3G58570 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Archaeplastida
LOC_Os06g40020.1 No alias DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa... 0.03 Archaeplastida
Pp3c14_17810V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
Pp3c1_40410V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 Archaeplastida
Pp3c2_1920V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
Smo267628 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.04 Archaeplastida
Solyc03g052980.3.1 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e011396_P001 No alias DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.07 Archaeplastida
Zm00001e011397_P001 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.07 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005777 peroxisome IDA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
MF GO:0008026 ATP-dependent helicase activity ISS Interproscan
Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004176 ATP-dependent peptidase activity IEP Neighborhood
BP GO:0006094 gluconeogenesis IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007020 microtubule nucleation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
CC GO:0008540 proteasome regulatory particle, base subcomplex IEP Neighborhood
BP GO:0009846 pollen germination IEP Neighborhood
BP GO:0019319 hexose biosynthetic process IEP Neighborhood
BP GO:0048481 plant ovule development IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1905369 endopeptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 175 354
IPR001650 Helicase_C 389 503
No external refs found!