AT3G58740 (CSY1)

Aliases : CSY1

Description : citrate synthase 1

Gene families : OG0003641 (Archaeplastida) Phylogenetic Tree(s): OG0003641_tree ,
OG_05_0004667 (LandPlants) Phylogenetic Tree(s): OG_05_0004667_tree ,
OG_06_0005912 (SeedPlants) Phylogenetic Tree(s): OG_06_0005912_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G58740
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method	Actions
AMTR_s00162p00052420	evm_27.TU.AmTr_v1...	Lipid metabolism.lipid degradation.fatty acid...	0.04	Archaeplastida
Pp3c23_9030V3.1	No alias	citrate synthase 3	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004108	citrate (Si)-synthase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005777	peroxisome	ISS	Interproscan
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006089	lactate metabolic process	None	Extended
BP	GO:0006099	tricarboxylic acid cycle	ISS	Interproscan
BP	GO:0006101	citrate metabolic process	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009438	methylglyoxal metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	transferase activity, transferring acyl groups	None	Extended
BP	GO:0016999	antibiotic metabolic process	None	Extended
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	RCA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
MF	GO:0036440	citrate synthase activity	None	Extended
BP	GO:0042180	cellular ketone metabolic process	None	Extended
BP	GO:0042182	ketone catabolic process	None	Extended
CC	GO:0042579	microbody	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046185	aldehyde catabolic process	None	Extended
MF	GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051596	methylglyoxal catabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061727	methylglyoxal catabolic process to lactate	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072350	tricarboxylic acid metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000248	C-5 sterol desaturase activity	IEP	Neighborhood
MF	GO:0000250	lanosterol synthase activity	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003825	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004312	fatty acid synthase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004607	phosphatidylcholine-sterol O-acyltransferase activity	IEP	Neighborhood
MF	GO:0004869	cysteine-type endopeptidase inhibitor activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005385	zinc ion transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
BP	GO:0005991	trehalose metabolic process	IEP	Neighborhood
BP	GO:0005992	trehalose biosynthetic process	IEP	Neighborhood
BP	GO:0006109	regulation of carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0006110	regulation of glycolytic process	IEP	Neighborhood
BP	GO:0006140	regulation of nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006624	vacuolar protein processing	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0006721	terpenoid metabolic process	IEP	Neighborhood
BP	GO:0006722	triterpenoid metabolic process	IEP	Neighborhood
BP	GO:0006829	zinc ion transport	IEP	Neighborhood
BP	GO:0006869	lipid transport	IEP	Neighborhood
MF	GO:0008134	transcription factor binding	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood
MF	GO:0008493	tetracycline transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008506	sucrose:proton symporter activity	IEP	Neighborhood
MF	GO:0008553	proton-exporting ATPase activity, phosphorylative mechanism	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0009410	response to xenobiotic stimulus	IEP	Neighborhood
BP	GO:0009624	response to nematode	IEP	Neighborhood
MF	GO:0009669	sucrose:cation symporter activity	IEP	Neighborhood
BP	GO:0009685	gibberellin metabolic process	IEP	Neighborhood
BP	GO:0009686	gibberellin biosynthetic process	IEP	Neighborhood
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	Neighborhood
MF	GO:0009922	fatty acid elongase activity	IEP	Neighborhood
BP	GO:0010052	guard cell differentiation	IEP	Neighborhood
BP	GO:0010087	phloem or xylem histogenesis	IEP	Neighborhood
BP	GO:0010089	xylem development	IEP	Neighborhood
BP	GO:0010105	negative regulation of ethylene-activated signaling pathway	IEP	Neighborhood
BP	GO:0010115	regulation of abscisic acid biosynthetic process	IEP	Neighborhood
BP	GO:0010116	positive regulation of abscisic acid biosynthetic process	IEP	Neighborhood
BP	GO:0010199	organ boundary specification between lateral organs and the meristem	IEP	Neighborhood
BP	GO:0010241	ent-kaurene oxidation to kaurenoic acid	IEP	Neighborhood
BP	GO:0010262	somatic embryogenesis	IEP	Neighborhood
MF	GO:0010294	abscisic acid glucosyltransferase activity	IEP	Neighborhood
BP	GO:0010344	seed oilbody biogenesis	IEP	Neighborhood
BP	GO:0010371	regulation of gibberellin biosynthetic process	IEP	Neighborhood
BP	GO:0010373	negative regulation of gibberellin biosynthetic process	IEP	Neighborhood
BP	GO:0010417	glucuronoxylan biosynthetic process	IEP	Neighborhood
BP	GO:0010600	regulation of auxin biosynthetic process	IEP	Neighborhood
BP	GO:0010601	positive regulation of auxin biosynthetic process	IEP	Neighborhood
MF	GO:0015020	glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0015225	biotin transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015238	drug transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015665	alcohol transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015858	nucleoside transport	IEP	Neighborhood
BP	GO:0016101	diterpenoid metabolic process	IEP	Neighborhood
BP	GO:0016102	diterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016104	triterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016114	terpenoid biosynthetic process	IEP	Neighborhood
MF	GO:0016298	lipase activity	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
CC	GO:0016602	CCAAT-binding factor complex	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Neighborhood
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016866	intramolecular transferase activity	IEP	Neighborhood
BP	GO:0019432	triglyceride biosynthetic process	IEP	Neighborhood
BP	GO:0019742	pentacyclic triterpenoid metabolic process	IEP	Neighborhood
BP	GO:0019745	pentacyclic triterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0030414	peptidase inhibitor activity	IEP	Neighborhood
BP	GO:0030497	fatty acid elongation	IEP	Neighborhood
BP	GO:0030808	regulation of nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0030811	regulation of nucleotide catabolic process	IEP	Neighborhood
CC	GO:0031012	extracellular matrix	IEP	Neighborhood
MF	GO:0031176	endo-1,4-beta-xylanase activity	IEP	Neighborhood
MF	GO:0031559	oxidosqualene cyclase activity	IEP	Neighborhood
BP	GO:0032350	regulation of hormone metabolic process	IEP	Neighborhood
BP	GO:0032351	negative regulation of hormone metabolic process	IEP	Neighborhood
BP	GO:0032352	positive regulation of hormone metabolic process	IEP	Neighborhood
BP	GO:0032353	negative regulation of hormone biosynthetic process	IEP	Neighborhood
BP	GO:0032881	regulation of polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0033331	ent-kaurene metabolic process	IEP	Neighborhood
BP	GO:0033356	UDP-L-arabinose metabolic process	IEP	Neighborhood
MF	GO:0033613	activating transcription factor binding	IEP	Neighborhood
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0036442	proton-exporting ATPase activity	IEP	Neighborhood
MF	GO:0042895	antibiotic transmembrane transporter activity	IEP	Neighborhood
BP	GO:0043470	regulation of carbohydrate catabolic process	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Neighborhood
MF	GO:0045544	gibberellin 20-oxidase activity	IEP	Neighborhood
MF	GO:0045547	dehydrodolichyl diphosphate synthase activity	IEP	Neighborhood
BP	GO:0045827	negative regulation of isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0045828	positive regulation of isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0045833	negative regulation of lipid metabolic process	IEP	Neighborhood
BP	GO:0045834	positive regulation of lipid metabolic process	IEP	Neighborhood
BP	GO:0046351	disaccharide biosynthetic process	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	Neighborhood
BP	GO:0046886	positive regulation of hormone biosynthetic process	IEP	Neighborhood
BP	GO:0046889	positive regulation of lipid biosynthetic process	IEP	Neighborhood
MF	GO:0047215	indole-3-acetate beta-glucosyltransferase activity	IEP	Neighborhood
BP	GO:0048859	formation of anatomical boundary	IEP	Neighborhood
BP	GO:0051055	negative regulation of lipid biosynthetic process	IEP	Neighborhood
MF	GO:0051184	cofactor transmembrane transporter activity	IEP	Neighborhood
MF	GO:0051185	coenzyme transmembrane transporter activity	IEP	Neighborhood
BP	GO:0051196	regulation of coenzyme metabolic process	IEP	Neighborhood
MF	GO:0051213	dioxygenase activity	IEP	Neighborhood
MF	GO:0051777	ent-kaurenoate oxidase activity	IEP	Neighborhood
MF	GO:0052691	UDP-arabinopyranose mutase activity	IEP	Neighborhood
MF	GO:0061134	peptidase regulator activity	IEP	Neighborhood
BP	GO:0062012	regulation of small molecule metabolic process	IEP	Neighborhood
BP	GO:0062013	positive regulation of small molecule metabolic process	IEP	Neighborhood
BP	GO:0062014	negative regulation of small molecule metabolic process	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
BP	GO:0070298	negative regulation of phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0070704	sterol desaturase activity	IEP	Neighborhood
MF	GO:0072509	divalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0080044	quercetin 7-O-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0080116	glucuronoxylan glucuronosyltransferase activity	IEP	Neighborhood
BP	GO:0090354	regulation of auxin metabolic process	IEP	Neighborhood
BP	GO:0090355	positive regulation of auxin metabolic process	IEP	Neighborhood
MF	GO:0090482	vitamin transmembrane transporter activity	IEP	Neighborhood
BP	GO:0090691	formation of plant organ boundary	IEP	Neighborhood
MF	GO:0097599	xylanase activity	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1900371	regulation of purine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:1900542	regulation of purine nucleotide metabolic process	IEP	Neighborhood
BP	GO:1901334	lactone metabolic process	IEP	Neighborhood
BP	GO:1901336	lactone biosynthetic process	IEP	Neighborhood
BP	GO:1901600	strigolactone metabolic process	IEP	Neighborhood
BP	GO:1901601	strigolactone biosynthetic process	IEP	Neighborhood
BP	GO:1901957	regulation of cutin biosynthetic process	IEP	Neighborhood
BP	GO:1901959	positive regulation of cutin biosynthetic process	IEP	Neighborhood
BP	GO:1902066	regulation of cell wall pectin metabolic process	IEP	Neighborhood
BP	GO:1902930	regulation of alcohol biosynthetic process	IEP	Neighborhood
BP	GO:1902932	positive regulation of alcohol biosynthetic process	IEP	Neighborhood
BP	GO:1903578	regulation of ATP metabolic process	IEP	Neighborhood
BP	GO:2001169	regulation of ATP biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002020	Citrate_synthase	96	460

External Links

No external refs found!

AT3G58740 (CSY1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation