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  5. AT3G58860

AT3G58860


Description : F-box/RNI-like superfamily protein


Gene families : OG0000914 (Archaeplastida) Phylogenetic Tree(s): OG0000914_tree ,
OG_05_0000543 (LandPlants) Phylogenetic Tree(s): OG_05_0000543_tree ,
OG_06_0000263 (SeedPlants) Phylogenetic Tree(s): OG_06_0000263_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G58860
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT1G48400 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 Archaeplastida
AT1G52650 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT1G64540 No alias F-box/FBD-like domains containing protein 0.09 Archaeplastida
AT2G29930 No alias F-box/RNI-like superfamily protein 0.1 Archaeplastida
AT3G44060 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT3G44080 No alias F-box family protein 0.06 Archaeplastida
AT3G44090 No alias F-box family protein 0.09 Archaeplastida
AT3G44180 No alias syntaxin-related family protein 0.04 Archaeplastida
AT3G49150 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT3G54160 No alias RNI-like superfamily protein 0.08 Archaeplastida
AT3G58920 No alias F-box/RNI-like superfamily protein 0.04 Archaeplastida
AT3G58950 No alias F-box/RNI-like superfamily protein 0.03 Archaeplastida
AT3G58980 No alias F-box family protein 0.06 Archaeplastida
AT3G59160 No alias F-box/RNI-like superfamily protein 0.09 Archaeplastida
AT3G59180 No alias Protein with RNI-like/FBD-like domains 0.04 Archaeplastida
AT3G59190 No alias F-box/RNI-like superfamily protein 0.06 Archaeplastida
AT4G13960 No alias F-box/RNI-like superfamily protein 0.07 Archaeplastida
AT5G35926 No alias Protein with RNI-like/FBD-like domains 0.09 Archaeplastida
AT5G38392 No alias No description available 0.06 Archaeplastida
AT5G41630 No alias F-box/RNI-like superfamily protein 0.06 Archaeplastida
AT5G41830 No alias RNI-like superfamily protein 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004743 pyruvate kinase activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006360 transcription by RNA polymerase I IEP Neighborhood
CC GO:0015935 small ribosomal subunit IEP Neighborhood
CC GO:0022627 cytosolic small ribosomal subunit IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
BP GO:0080154 regulation of fertilization IEP Neighborhood
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 8 42
IPR013101 Leu-rich_rpt_2 164 188
No external refs found!