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  5. AT3G59190

AT3G59190


Description : F-box/RNI-like superfamily protein


Gene families : OG0000914 (Archaeplastida) Phylogenetic Tree(s): OG0000914_tree ,
OG_05_0000543 (LandPlants) Phylogenetic Tree(s): OG_05_0000543_tree ,
OG_06_0000263 (SeedPlants) Phylogenetic Tree(s): OG_06_0000263_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G59190
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
AT1G47920 No alias RNI-like superfamily protein 0.05 Archaeplastida
AT1G48390 No alias RNI-like superfamily protein 0.05 Archaeplastida
AT1G48400 No alias F-box/RNI-like/FBD-like domains-containing protein 0.08 Archaeplastida
AT1G64540 No alias F-box/FBD-like domains containing protein 0.05 Archaeplastida
AT2G29910 No alias F-box/RNI-like superfamily protein 0.06 Archaeplastida
AT2G29930 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT3G44060 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT3G44080 No alias F-box family protein 0.08 Archaeplastida
AT3G44090 No alias F-box family protein 0.08 Archaeplastida
AT3G49150 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT3G58860 No alias F-box/RNI-like superfamily protein 0.06 Archaeplastida
AT3G58920 No alias F-box/RNI-like superfamily protein 0.06 Archaeplastida
AT3G58940 No alias F-box/RNI-like superfamily protein 0.08 Archaeplastida
AT3G58950 No alias F-box/RNI-like superfamily protein 0.02 Archaeplastida
AT3G58960 No alias F-box/RNI-like/FBD-like domains-containing protein 0.08 Archaeplastida
AT3G59230 No alias RNI-like superfamily protein 0.03 Archaeplastida
AT3G59240 No alias RNI-like superfamily protein 0.05 Archaeplastida
AT3G62440 No alias F-box/RNI-like superfamily protein 0.03 Archaeplastida
AT4G14096 No alias F-box/RNI-like superfamily protein 0.04 Archaeplastida
AT5G15620 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT5G25860 No alias F-box/RNI-like superfamily protein 0.04 Archaeplastida
AT5G35926 No alias Protein with RNI-like/FBD-like domains 0.04 Archaeplastida
AT5G35995 No alias F-box/RNI-like superfamily protein 0.03 Archaeplastida
AT5G38396 No alias F-box/RNI-like superfamily protein 0.04 Archaeplastida
AT5G41630 No alias F-box/RNI-like superfamily protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0010093 specification of floral organ identity RCA Interproscan
BP GO:0048440 carpel development RCA Interproscan
BP GO:0048507 meristem development RCA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
CC GO:0000785 chromatin IEP Neighborhood
CC GO:0000790 nuclear chromatin IEP Neighborhood
CC GO:0000795 synaptonemal complex IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
CC GO:0005712 chiasma IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006312 mitotic recombination IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
BP GO:0009616 virus induced gene silencing IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
BP GO:0010050 vegetative phase change IEP Neighborhood
BP GO:0010154 fruit development IEP Neighborhood
BP GO:0010162 seed dormancy process IEP Neighborhood
BP GO:0016444 somatic cell DNA recombination IEP Neighborhood
BP GO:0022611 dormancy process IEP Neighborhood
MF GO:0030674 protein binding, bridging IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
CC GO:0032300 mismatch repair complex IEP Neighborhood
CC GO:0032389 MutLalpha complex IEP Neighborhood
CC GO:0032390 MutLbeta complex IEP Neighborhood
MF GO:0032451 demethylase activity IEP Neighborhood
MF GO:0035514 DNA demethylase activity IEP Neighborhood
BP GO:0042138 meiotic DNA double-strand break formation IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0048229 gametophyte development IEP Neighborhood
BP GO:0048316 seed development IEP Neighborhood
BP GO:0048609 multicellular organismal reproductive process IEP Neighborhood
BP GO:0048825 cotyledon development IEP Neighborhood
BP GO:0052018 modulation by symbiont of RNA levels in host IEP Neighborhood
BP GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
BP GO:0061982 meiosis I cell cycle process IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
BP GO:0098586 cellular response to virus IEP Neighborhood
CC GO:0099086 synaptonemal structure IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
CC GO:1990391 DNA repair complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 13 48
IPR013101 Leu-rich_rpt_2 169 196
No external refs found!