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  5. Mp3g02880.1

Mp3g02880.1


Description : component SNL of histone deacetylase machineries


Gene families : OG0000780 (Archaeplastida) Phylogenetic Tree(s): OG0000780_tree ,
OG_05_0001649 (LandPlants) Phylogenetic Tree(s): OG_05_0001649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g02880.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00182010 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.03 Archaeplastida
AT1G10450 SNL6 SIN3-like 6 0.06 Archaeplastida
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.02 Archaeplastida
AT3G01320 SNL1 SIN3-like 1 0.07 Archaeplastida
AT5G15020 SNL2 SIN3-like 2 0.03 Archaeplastida
Cpa|evm.model.tig00001155.28 No alias Paired amphipathic helix protein Sin3-like 1... 0.04 Archaeplastida
Cpa|evm.model.tig00021234.23 No alias Paired amphipathic helix protein Sin3-like 3... 0.02 Archaeplastida
Cre03.g180800 No alias Paired amphipathic helix protein Sin3-like 4... 0.03 Archaeplastida
GSVIVT01020136001 No alias Chromatin organisation.histone modifications.histone... 0.05 Archaeplastida
GSVIVT01032579001 No alias Chromatin organisation.histone modifications.histone... 0.07 Archaeplastida
Gb_35988 No alias component SNL of histone deacetylase machineries 0.08 Archaeplastida
MA_18241g0010 No alias component SNL of histone deacetylase machineries 0.03 Archaeplastida
Pp3c24_13770V3.1 No alias SIN3-like 3 0.03 Archaeplastida
Pp3c24_16180V3.1 No alias SIN3-like 4 0.02 Archaeplastida
Pp3c8_17710V3.1 No alias SIN3-like 2 0.02 Archaeplastida
Solyc02g067570.3.1 No alias component SNL of histone deacetylase machineries 0.03 Archaeplastida
Solyc02g087360.4.1 No alias component SNL of histone deacetylase machineries 0.04 Archaeplastida
Zm00001e017111_P002 No alias component SNL of histone deacetylase machineries 0.04 Archaeplastida
Zm00001e025644_P001 No alias component SNL of histone deacetylase machineries 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR031693 Sin3_C 1111 1360
IPR013194 HDAC_interact_dom 524 613
IPR003822 PAH 64 108
IPR003822 PAH 379 423
IPR003822 PAH 154 198
No external refs found!