Description : DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana (sp|q9lq02|nrpd1_arath : 461.0)

Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree ,
OG_05_0006334 (LandPlants) Phylogenetic Tree(s): OG_05_0006334_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Mp3g05720.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AT2G40030 DRD3, ATNRPD1B,... nuclear RNA polymerase D1B 0.03 Archaeplastida
Smo442419 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
CC GO:0030906 retromer, cargo-selective complex IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 509 678
IPR007081 RNA_pol_Rpb1_5 1019 1485
IPR007080 RNA_pol_Rpb1_1 8 408
IPR007083 RNA_pol_Rpb1_4 905 966
IPR007066 RNA_pol_Rpb1_3 681 828
No external refs found!