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  5. Mp3g08820.1

Mp3g08820.1


Description : exoribonuclease (RAT1/XRN2)


Gene families : OG0000811 (Archaeplastida) Phylogenetic Tree(s): OG0000811_tree ,
OG_05_0000830 (LandPlants) Phylogenetic Tree(s): OG_05_0000830_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g08820.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00046450 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.04 Archaeplastida
AMTR_s00491p00000370 evm_27.TU.AmTr_v1... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.05 Archaeplastida
AT1G54490 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease 4 0.03 Archaeplastida
AT1G75660 XRN3, AtXRN3 5'-3' exoribonuclease 3 0.02 Archaeplastida
AT5G42540 XRN2, AtXRN2 exoribonuclease 2 0.03 Archaeplastida
Cre06.g280050 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre16.g679900 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01009879001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Gb_03499 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_09607 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os01g65220.1 No alias exoribonuclease (RAT1/XRN2) 0.03 Archaeplastida
LOC_Os03g58060.1 No alias EBF-modulating exoribonuclease (EIN5/XRN4).... 0.05 Archaeplastida
MA_10430844g0010 No alias exoribonuclease (RAT1/XRN2) 0.04 Archaeplastida
MA_141906g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c14_10280V3.1 No alias 5\-3\ exoribonuclease 3 0.02 Archaeplastida
Pp3c24_2160V3.1 No alias 5\-3\ exoribonuclease 3 0.05 Archaeplastida
Solyc04g049010.3.1 No alias EBF-modulating exoribonuclease (EIN5/XRN4).... 0.02 Archaeplastida
Solyc04g081280.3.1 No alias exoribonuclease (RAT1/XRN2) 0.07 Archaeplastida
Solyc12g089280.2.1 No alias exoribonuclease (RAT1/XRN2) 0.02 Archaeplastida
Zm00001e011879_P001 No alias EBF-modulating exoribonuclease (EIN5/XRN4).... 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006623 protein targeting to vacuole IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0016255 attachment of GPI anchor to protein IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0072665 protein localization to vacuole IEP Neighborhood
BP GO:0072666 establishment of protein localization to vacuole IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 263 277
IPR004859 Put_53exo 1 253
No external refs found!