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  5. AT4G00160

AT4G00160


Description : F-box/RNI-like/FBD-like domains-containing protein


Gene families : OG0001094 (Archaeplastida) Phylogenetic Tree(s): OG0001094_tree ,
OG_05_0000663 (LandPlants) Phylogenetic Tree(s): OG_05_0000663_tree ,
OG_06_0000324 (SeedPlants) Phylogenetic Tree(s): OG_06_0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G00160
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G50980 No alias F-box/RNI-like/FBD-like domains-containing protein 0.06 Archaeplastida
AT1G55030 No alias RNI-like superfamily protein 0.11 Archaeplastida
AT3G10750 No alias FBD domain family 0.08 Archaeplastida
AT3G49020 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.09 Archaeplastida
AT3G49030 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.09 Archaeplastida
AT3G49040 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT3G49045 No alias No description available 0.05 Archaeplastida
AT3G52690 No alias RNI-like superfamily protein 0.09 Archaeplastida
AT4G10420 No alias FBD / Leucine Rich Repeat domains containing protein 0.03 Archaeplastida
AT4G13965 No alias Protein with RNI-like/FBD-like domains 0.05 Archaeplastida
AT4G26350 No alias F-box/RNI-like/FBD-like domains-containing protein 0.09 Archaeplastida
AT5G38570 No alias F-box/RNI-like superfamily protein 0.07 Archaeplastida
AT5G38590 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 Archaeplastida
AT5G44850 No alias Protein with RNI-like/FBD-like domains 0.03 Archaeplastida
AT5G52460 EDA41 FBD, F-box and Leucine Rich Repeat domains containing protein 0.03 Archaeplastida
AT5G56325 No alias FBD-like domain family protein 0.08 Archaeplastida
AT5G56390 No alias F-box/RNI-like/FBD-like domains-containing protein 0.09 Archaeplastida
AT5G56400 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.11 Archaeplastida
AT5G56410 No alias Protein with RNI-like/FBD-like domains 0.05 Archaeplastida
AT5G56430 No alias F-box/FBD-like domains containing protein 0.11 Archaeplastida
AT5G56440 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 Archaeplastida
AT5G56452 No alias FBD-like domain family protein 0.09 Archaeplastida
AT5G56560 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.08 Archaeplastida
AT5G56570 No alias Leucine-rich repeat (LRR) family protein 0.08 Archaeplastida
AT5G56820 No alias F-box/RNI-like/FBD-like domains-containing protein 0.02 Archaeplastida
AT5G62970 No alias Protein with RNI-like/FBD-like domains 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP Neighborhood
BP GO:0000723 telomere maintenance IEP Neighborhood
MF GO:0000976 transcription regulatory region sequence-specific DNA binding IEP Neighborhood
MF GO:0000987 proximal promoter sequence-specific DNA binding IEP Neighborhood
CC GO:0001673 male germ cell nucleus IEP Neighborhood
BP GO:0002790 peptide secretion IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0004108 citrate (Si)-synthase activity IEP Neighborhood
MF GO:0004484 mRNA guanylyltransferase activity IEP Neighborhood
MF GO:0004860 protein kinase inhibitor activity IEP Neighborhood
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005815 microtubule organizing center IEP Neighborhood
CC GO:0005876 spindle microtubule IEP Neighborhood
CC GO:0005881 cytoplasmic microtubule IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006266 DNA ligation IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
BP GO:0009306 protein secretion IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
CC GO:0009574 preprophase band IEP Neighborhood
BP GO:0009652 thigmotropism IEP Neighborhood
CC GO:0010005 cortical microtubule, transverse to long axis IEP Neighborhood
BP GO:0010098 suspensor development IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010214 seed coat development IEP Neighborhood
BP GO:0010222 stem vascular tissue pattern formation IEP Neighborhood
BP GO:0010332 response to gamma radiation IEP Neighborhood
BP GO:0010588 cotyledon vascular tissue pattern formation IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0019210 kinase inhibitor activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Neighborhood
MF GO:0030332 cyclin binding IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0032204 regulation of telomere maintenance IEP Neighborhood
BP GO:0032504 multicellular organism reproduction IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
MF GO:0036440 citrate synthase activity IEP Neighborhood
BP GO:0042138 meiotic DNA double-strand break formation IEP Neighborhood
CC GO:0043073 germ cell nucleus IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043247 telomere maintenance in response to DNA damage IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
BP GO:0048598 embryonic morphogenesis IEP Neighborhood
BP GO:0048830 adventitious root development IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
CC GO:0055028 cortical microtubule IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
BP GO:0061982 meiosis I cell cycle process IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
BP GO:0080159 zygote elongation IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 17 53
IPR013101 Leu-rich_rpt_2 167 192
IPR006566 FBD 359 404
No external refs found!