Mp3g13420.1


Description : DNA topoisomerase (TOP2)


Gene families : OG0003355 (Archaeplastida) Phylogenetic Tree(s): OG0003355_tree ,
OG_05_0004398 (LandPlants) Phylogenetic Tree(s): OG_05_0004398_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g13420.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00103p00101630 evm_27.TU.AmTr_v1... Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.09 Archaeplastida
AT3G23890 TOPII, ATTOPII topoisomerase II 0.11 Archaeplastida
Cpa|evm.model.tig00021432.55 No alias DNA topoisomerase 2 OS=Pisum sativum 0.05 Archaeplastida
Cpa|evm.model.tig00021433.2 No alias DNA topoisomerase 2 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre01.g009250 No alias Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.03 Archaeplastida
GSVIVT01032138001 No alias Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.13 Archaeplastida
Gb_11673 No alias DNA topoisomerase (TOP2) 0.13 Archaeplastida
Gb_12824 No alias DNA topoisomerase 2 OS=Pisum sativum (sp|o24308|top2_pea : 112.0) 0.11 Archaeplastida
LOC_Os02g47150.1 No alias DNA topoisomerase (TOP2) 0.04 Archaeplastida
MA_133272g0010 No alias DNA topoisomerase (TOP2) 0.09 Archaeplastida
MA_6634g0010 No alias DNA topoisomerase (TOP2) 0.09 Archaeplastida
Pp3c18_20260V3.1 No alias topoisomerase II 0.06 Archaeplastida
Pp3c19_3610V3.1 No alias topoisomerase II 0.07 Archaeplastida
Smo127267 No alias Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.08 Archaeplastida
Smo98330 No alias Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.05 Archaeplastida
Solyc01g087500.3.1 No alias DNA topoisomerase (TOP2) 0.08 Archaeplastida
Zm00001e015542_P001 No alias DNA topoisomerase (TOP2) 0.12 Archaeplastida
Zm00001e023296_P001 No alias DNA topoisomerase (TOP2) 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Neighborhood
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR013506 Topo_IIA_bsu_dom2 292 451
IPR002205 Topo_IIA_A/C 726 1186
IPR003594 HATPase_C 102 248
IPR006171 TOPRIM_domain 482 580
IPR031660 TOPRIM_C 596 723
No external refs found!