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  5. AT1G16830

AT1G16830


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0011510 (Archaeplastida) Phylogenetic Tree(s): OG0011510_tree ,
OG_05_0011402 (LandPlants) Phylogenetic Tree(s): OG_05_0011402_tree ,
OG_06_0011461 (SeedPlants) Phylogenetic Tree(s): OG_06_0011461_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G16830
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
LOC_Os10g42760.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e002488_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
MF GO:0003923 GPI-anchor transamidase activity IEP Neighborhood
BP GO:0006665 sphingolipid metabolic process IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
BP GO:0030148 sphingolipid biosynthetic process IEP Neighborhood
BP GO:0042773 ATP synthesis coupled electron transport IEP Neighborhood
BP GO:0042775 mitochondrial ATP synthesis coupled electron transport IEP Neighborhood
BP GO:0046519 sphingoid metabolic process IEP Neighborhood
BP GO:0046520 sphingoid biosynthetic process IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:0097164 ammonium ion metabolic process IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 246 293
IPR002885 Pentatricopeptide_repeat 315 363
IPR002885 Pentatricopeptide_repeat 488 536
IPR002885 Pentatricopeptide_repeat 218 243
IPR002885 Pentatricopeptide_repeat 420 447
No external refs found!