AT4G00870

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000688 (Archaeplastida) Phylogenetic Tree(s): OG0000688_tree ,
OG_05_0000488 (LandPlants) Phylogenetic Tree(s): OG_05_0000488_tree ,
OG_06_0001395 (SeedPlants) Phylogenetic Tree(s): OG_06_0001395_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G00870
Cluster	HCCA: Cluster_116

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os01g50940.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os10g42430.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Smo445428	No alias	No description available	0.03	Archaeplastida
Solyc01g096370.4.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Solyc08g083170.1.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	Neighborhood
BP	GO:0003002	regionalization	IEP	Neighborhood
BP	GO:0003006	developmental process involved in reproduction	IEP	Neighborhood
MF	GO:0003785	actin monomer binding	IEP	Neighborhood
MF	GO:0004144	diacylglycerol O-acyltransferase activity	IEP	Neighborhood
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Neighborhood
BP	GO:0006308	DNA catabolic process	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
BP	GO:0008356	asymmetric cell division	IEP	Neighborhood
MF	GO:0008810	cellulase activity	IEP	Neighborhood
BP	GO:0009553	embryo sac development	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009664	plant-type cell wall organization	IEP	Neighborhood
BP	GO:0009786	regulation of asymmetric cell division	IEP	Neighborhood
BP	GO:0009791	post-embryonic development	IEP	Neighborhood
BP	GO:0009827	plant-type cell wall modification	IEP	Neighborhood
BP	GO:0009860	pollen tube growth	IEP	Neighborhood
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	Neighborhood
BP	GO:0009888	tissue development	IEP	Neighborhood
BP	GO:0009900	dehiscence	IEP	Neighborhood
BP	GO:0009908	flower development	IEP	Neighborhood
BP	GO:0009909	regulation of flower development	IEP	Neighborhood
CC	GO:0009986	cell surface	IEP	Neighborhood
BP	GO:0010047	fruit dehiscence	IEP	Neighborhood
BP	GO:0010093	specification of floral organ identity	IEP	Neighborhood
BP	GO:0010160	formation of animal organ boundary	IEP	Neighborhood
CC	GO:0010169	thioglucosidase complex	IEP	Neighborhood
MF	GO:0010180	thioglucosidase binding	IEP	Neighborhood
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	Neighborhood
BP	GO:0010321	regulation of vegetative phase change	IEP	Neighborhood
BP	GO:0010358	leaf shaping	IEP	Neighborhood
BP	GO:0010417	glucuronoxylan biosynthetic process	IEP	Neighborhood
BP	GO:0010430	fatty acid omega-oxidation	IEP	Neighborhood
BP	GO:0010500	transmitting tissue development	IEP	Neighborhood
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
CC	GO:0030139	endocytic vesicle	IEP	Neighborhood
CC	GO:0031209	SCAR complex	IEP	Neighborhood
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Neighborhood
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Neighborhood
MF	GO:0046593	mandelonitrile lyase activity	IEP	Neighborhood
MF	GO:0047196	long-chain-alcohol O-fatty-acyltransferase activity	IEP	Neighborhood
BP	GO:0048367	shoot system development	IEP	Neighborhood
BP	GO:0048437	floral organ development	IEP	Neighborhood
BP	GO:0048440	carpel development	IEP	Neighborhood
BP	GO:0048441	petal development	IEP	Neighborhood
BP	GO:0048443	stamen development	IEP	Neighborhood
BP	GO:0048462	carpel formation	IEP	Neighborhood
BP	GO:0048481	plant ovule development	IEP	Neighborhood
BP	GO:0048507	meristem development	IEP	Neighborhood
BP	GO:0048532	anatomical structure arrangement	IEP	Neighborhood
BP	GO:0048580	regulation of post-embryonic development	IEP	Neighborhood
BP	GO:0048608	reproductive structure development	IEP	Neighborhood
BP	GO:0048609	multicellular organismal reproductive process	IEP	Neighborhood
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	Neighborhood
BP	GO:0048731	system development	IEP	Neighborhood
BP	GO:0048825	cotyledon development	IEP	Neighborhood
BP	GO:0048827	phyllome development	IEP	Neighborhood
BP	GO:0048829	root cap development	IEP	Neighborhood
BP	GO:0048831	regulation of shoot system development	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0048859	formation of anatomical boundary	IEP	Neighborhood
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Neighborhood
BP	GO:0050793	regulation of developmental process	IEP	Neighborhood
BP	GO:0051125	regulation of actin nucleation	IEP	Neighborhood
BP	GO:0051127	positive regulation of actin nucleation	IEP	Neighborhood
BP	GO:0051239	regulation of multicellular organismal process	IEP	Neighborhood
BP	GO:0051301	cell division	IEP	Neighborhood
MF	GO:0070001	aspartic-type peptidase activity	IEP	Neighborhood
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Neighborhood
CC	GO:0071944	cell periphery	IEP	Neighborhood
BP	GO:0080051	cutin transport	IEP	Neighborhood
BP	GO:0080172	petal epidermis patterning	IEP	Neighborhood
BP	GO:0090567	reproductive shoot system development	IEP	Neighborhood
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	Neighborhood
BP	GO:0090701	specification of plant organ identity	IEP	Neighborhood
BP	GO:0099402	plant organ development	IEP	Neighborhood
BP	GO:1905393	plant organ formation	IEP	Neighborhood
BP	GO:2000024	regulation of leaf development	IEP	Neighborhood
BP	GO:2000026	regulation of multicellular organismal development	IEP	Neighborhood
BP	GO:2000039	regulation of trichome morphogenesis	IEP	Neighborhood
BP	GO:2000241	regulation of reproductive process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	249	295
IPR025610	MYC/MYB_N	35	189

External Links

No external refs found!

AT4G00870

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation