Mp3g22490.1

Description : associated component HDC1/Rxt3 of histone deacetylase machineries

Gene families : OG0003813 (Archaeplastida) Phylogenetic Tree(s): OG0003813_tree ,
OG_05_0003622 (LandPlants) Phylogenetic Tree(s): OG_05_0003622_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp3g22490.1
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
Cre03.g182600	No alias	Chromatin organisation.histone modifications.histone...	0.02	Archaeplastida
GSVIVT01000253001	No alias	Chromatin organisation.histone modifications.histone...	0.02	Archaeplastida
Mp3g12140.1	No alias	associated component HDC1/Rxt3 of histone deacetylase machineries	0.01	Archaeplastida
Solyc05g056340.3.1	No alias	associated component HDC1/Rxt3 of histone deacetylase machineries	0.01	Archaeplastida
Zm00001e010714_P003	No alias	associated component HDC1/Rxt3 of histone deacetylase machineries	0.01	Archaeplastida
Zm00001e022328_P001	No alias	associated component HDC1/Rxt3 of histone deacetylase machineries	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006476	protein deacetylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016569	covalent chromatin modification	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016575	histone deacetylation	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0035601	protein deacylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0098732	macromolecule deacylation	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR013951	Rxt3	684	713

External Links

No external refs found!