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Aliases : CIP4.1
Description : COP1-interacting protein 4.1
Gene families : OG0006542 (Archaeplastida) Phylogenetic Tree(s): OG0006542_tree ,
OG_05_0004505 (LandPlants) Phylogenetic Tree(s): OG_05_0004505_tree ,
OG_06_0004113 (SeedPlants) Phylogenetic Tree(s): OG_06_0004113_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT4G00930 | |
| Cluster | HCCA: Cluster_24 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00061p00209430 | evm_27.TU.AmTr_v1... | No description available | 0.03 | Archaeplastida | |
| AT4G00580 | No alias | COP1-interacting protein-related | 0.04 | Archaeplastida | |
| Solyc05g014130.3.1 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| CC | GO:0005886 | plasma membrane | ISM | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Neighborhood |
| BP | GO:0003006 | developmental process involved in reproduction | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003774 | motor activity | IEP | Neighborhood |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
| MF | GO:0003983 | UTP:glucose-1-phosphate uridylyltransferase activity | IEP | Neighborhood |
| MF | GO:0004835 | tubulin-tyrosine ligase activity | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | Neighborhood |
| BP | GO:0006011 | UDP-glucose metabolic process | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
| BP | GO:0006304 | DNA modification | IEP | Neighborhood |
| BP | GO:0006305 | DNA alkylation | IEP | Neighborhood |
| BP | GO:0006306 | DNA methylation | IEP | Neighborhood |
| BP | GO:0006323 | DNA packaging | IEP | Neighborhood |
| BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006366 | transcription by RNA polymerase II | IEP | Neighborhood |
| BP | GO:0006379 | mRNA cleavage | IEP | Neighborhood |
| BP | GO:0006405 | RNA export from nucleus | IEP | Neighborhood |
| BP | GO:0006406 | mRNA export from nucleus | IEP | Neighborhood |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | Neighborhood |
| BP | GO:0007129 | synapsis | IEP | Neighborhood |
| CC | GO:0008278 | cohesin complex | IEP | Neighborhood |
| BP | GO:0008608 | attachment of spindle microtubules to kinetochore | IEP | Neighborhood |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0009909 | regulation of flower development | IEP | Neighborhood |
| BP | GO:0010032 | meiotic chromosome condensation | IEP | Neighborhood |
| BP | GO:0010424 | DNA methylation on cytosine within a CG sequence | IEP | Neighborhood |
| MF | GO:0010428 | methyl-CpNpG binding | IEP | Neighborhood |
| MF | GO:0010429 | methyl-CpNpN binding | IEP | Neighborhood |
| BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
| MF | GO:0010491 | UTP:arabinose-1-phosphate uridylyltransferase activity | IEP | Neighborhood |
| BP | GO:0010528 | regulation of transposition | IEP | Neighborhood |
| BP | GO:0010529 | negative regulation of transposition | IEP | Neighborhood |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0010589 | leaf proximal/distal pattern formation | IEP | Neighborhood |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016458 | gene silencing | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| BP | GO:0016573 | histone acetylation | IEP | Neighborhood |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
| BP | GO:0016973 | poly(A)+ mRNA export from nucleus | IEP | Neighborhood |
| MF | GO:0017103 | UTP:galactose-1-phosphate uridylyltransferase activity | IEP | Neighborhood |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | Neighborhood |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | Neighborhood |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0022414 | reproductive process | IEP | Neighborhood |
| BP | GO:0030261 | chromosome condensation | IEP | Neighborhood |
| BP | GO:0031047 | gene silencing by RNA | IEP | Neighborhood |
| BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0031935 | regulation of chromatin silencing | IEP | Neighborhood |
| BP | GO:0031937 | positive regulation of chromatin silencing | IEP | Neighborhood |
| BP | GO:0032259 | methylation | IEP | Neighborhood |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
| BP | GO:0032776 | DNA methylation on cytosine | IEP | Neighborhood |
| BP | GO:0033044 | regulation of chromosome organization | IEP | Neighborhood |
| BP | GO:0033233 | regulation of protein sumoylation | IEP | Neighborhood |
| BP | GO:0033234 | negative regulation of protein sumoylation | IEP | Neighborhood |
| BP | GO:0033356 | UDP-L-arabinose metabolic process | IEP | Neighborhood |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
| MF | GO:0035197 | siRNA binding | IEP | Neighborhood |
| BP | GO:0035279 | mRNA cleavage involved in gene silencing by miRNA | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043412 | macromolecule modification | IEP | Neighborhood |
| BP | GO:0043414 | macromolecule methylation | IEP | Neighborhood |
| BP | GO:0043687 | post-translational protein modification | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| BP | GO:0044728 | DNA methylation or demethylation | IEP | Neighborhood |
| BP | GO:0045003 | double-strand break repair via synthesis-dependent strand annealing | IEP | Neighborhood |
| BP | GO:0045596 | negative regulation of cell differentiation | IEP | Neighborhood |
| BP | GO:0046398 | UDP-glucuronate metabolic process | IEP | Neighborhood |
| MF | GO:0047338 | UTP:xylose-1-phosphate uridylyltransferase activity | IEP | Neighborhood |
| MF | GO:0047350 | glucuronate-1-phosphate uridylyltransferase activity | IEP | Neighborhood |
| BP | GO:0048443 | stamen development | IEP | Neighborhood |
| BP | GO:0048449 | floral organ formation | IEP | Neighborhood |
| BP | GO:0048451 | petal formation | IEP | Neighborhood |
| BP | GO:0048453 | sepal formation | IEP | Neighborhood |
| BP | GO:0048481 | plant ovule development | IEP | Neighborhood |
| BP | GO:0048497 | maintenance of floral organ identity | IEP | Neighborhood |
| BP | GO:0048519 | negative regulation of biological process | IEP | Neighborhood |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Neighborhood |
| BP | GO:0050657 | nucleic acid transport | IEP | Neighborhood |
| BP | GO:0050658 | RNA transport | IEP | Neighborhood |
| BP | GO:0051028 | mRNA transport | IEP | Neighborhood |
| BP | GO:0051054 | positive regulation of DNA metabolic process | IEP | Neighborhood |
| BP | GO:0051168 | nuclear export | IEP | Neighborhood |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051177 | meiotic sister chromatid cohesion | IEP | Neighborhood |
| BP | GO:0051236 | establishment of RNA localization | IEP | Neighborhood |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0051316 | attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation | IEP | Neighborhood |
| BP | GO:0051455 | attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation | IEP | Neighborhood |
| MF | GO:0051748 | UTP-monosaccharide-1-phosphate uridylyltransferase activity | IEP | Neighborhood |
| BP | GO:0051754 | meiotic sister chromatid cohesion, centromeric | IEP | Neighborhood |
| BP | GO:0052573 | UDP-D-galactose metabolic process | IEP | Neighborhood |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0060341 | regulation of cellular localization | IEP | Neighborhood |
| BP | GO:0060968 | regulation of gene silencing | IEP | Neighborhood |
| MF | GO:0061980 | regulatory RNA binding | IEP | Neighborhood |
| BP | GO:0070192 | chromosome organization involved in meiotic cell cycle | IEP | Neighborhood |
| MF | GO:0070569 | uridylyltransferase activity | IEP | Neighborhood |
| BP | GO:0070601 | centromeric sister chromatid cohesion | IEP | Neighborhood |
| BP | GO:0080154 | regulation of fertilization | IEP | Neighborhood |
| BP | GO:0080155 | regulation of double fertilization forming a zygote and endosperm | IEP | Neighborhood |
| BP | GO:0080188 | RNA-directed DNA methylation | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:0090308 | regulation of methylation-dependent chromatin silencing | IEP | Neighborhood |
| BP | GO:0090309 | positive regulation of methylation-dependent chromatin silencing | IEP | Neighborhood |
| BP | GO:0090700 | maintenance of plant organ identity | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
| MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
| BP | GO:0098795 | mRNA cleavage involved in gene silencing | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| BP | GO:1903320 | regulation of protein modification by small protein conjugation or removal | IEP | Neighborhood |
| BP | GO:1903321 | negative regulation of protein modification by small protein conjugation or removal | IEP | Neighborhood |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:1903827 | regulation of cellular protein localization | IEP | Neighborhood |
| BP | GO:1905269 | positive regulation of chromatin organization | IEP | Neighborhood |
| BP | GO:1905393 | plant organ formation | IEP | Neighborhood |
| BP | GO:2000008 | regulation of protein localization to cell surface | IEP | Neighborhood |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:2000241 | regulation of reproductive process | IEP | Neighborhood |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
| BP | GO:2001252 | positive regulation of chromosome organization | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |