1. Home
  2. Species
  3. Marchantia polymorpha
  4. Sequence
  5. Mp4g02060.1

Mp4g02060.1


Description : transcription factor (PHD)


Gene families : OG0001716 (Archaeplastida) Phylogenetic Tree(s): OG0001716_tree ,
OG_05_0001846 (LandPlants) Phylogenetic Tree(s): OG_05_0001846_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g02060.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cre12.g492200 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01037894001 No alias RNA biosynthesis.transcriptional activation.HB... 0.07 Archaeplastida
Gb_17969 No alias transcription factor (PHD) 0.01 Archaeplastida
LOC_Os02g05450.1 No alias transcription factor (PHD) 0.04 Archaeplastida
LOC_Os06g12400.1 No alias transcription factor (PHD) 0.04 Archaeplastida
MA_10427612g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c3_29290V3.1 No alias pathogenesis related homeodomain protein A 0.02 Archaeplastida
Solyc07g008730.2.1 No alias transcription factor (PHD) 0.02 Archaeplastida
Zm00001e013656_P001 No alias transcription factor (PHD) 0.02 Archaeplastida
Zm00001e019808_P001 No alias transcription factor (PHD) 0.06 Archaeplastida
Zm00001e027428_P001 No alias transcription factor (PHD) 0.02 Archaeplastida
Zm00001e029056_P003 No alias transcription factor (PHD) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 639 687
IPR019787 Znf_PHD-finger 320 374
No external refs found!