- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : DNA-directed RNA polymerase subunit beta OS=Marchantia polymorpha (sp|p06273|rpoc1_marpo : 145.0)
Gene families : OG0000707 (Archaeplastida) Phylogenetic Tree(s): OG0000707_tree ,
OG_05_0002942 (LandPlants) Phylogenetic Tree(s): OG_05_0002942_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp4g02290.1 | |
| Cluster | HCCA: Cluster_140 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| ATCG00170 | RPOC2 | DNA-directed RNA polymerase family protein | 0.03 | Archaeplastida | |
| ATCG00180 | RPOC1 | DNA-directed RNA polymerase family protein | 0.02 | Archaeplastida | |
| Gb_09031 | No alias | DNA-directed RNA polymerase subunit beta OS=Cycas... | 0.05 | Archaeplastida | |
| Gb_09032 | No alias | DNA-directed RNA polymerase subunit beta OS=Pinus... | 0.04 | Archaeplastida | |
| Gb_09773 | No alias | DNA-directed RNA polymerase subunit beta OS=Cycas... | 0.03 | Archaeplastida | |
| Gb_10415 | No alias | DNA-directed RNA polymerase subunit beta OS=Pinus... | 0.04 | Archaeplastida | |
| Gb_26285 | No alias | DNA-directed RNA polymerase subunit beta OS=Cycas... | 0.05 | Archaeplastida | |
| LOC_Os02g24614.1 | No alias | RpoC1 core component plastid-encoded RNA polymerase | 0.05 | Archaeplastida | |
| LOC_Os04g16830.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Oryza sativa... | 0.06 | Archaeplastida | |
| Solyc00g500052.1.1 | No alias | RpoC1 core component plastid-encoded RNA polymerase.... | 0.05 | Archaeplastida | |
| Solyc00g500135.1.1 | No alias | RpoC1 core component plastid-encoded RNA polymerase.... | 0.05 | Archaeplastida | |
| Solyc00g500205.1.1 | No alias | RpoC1 core component plastid-encoded RNA polymerase.... | 0.05 | Archaeplastida | |
| Solyc00g500290.1.1 | No alias | RpoC2 core component plastid-encoded RNA polymerase | 0.03 | Archaeplastida | |
| Solyc01g017370.2.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Nicotiana... | 0.06 | Archaeplastida | |
| Solyc01g017470.3.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Solanum... | 0.05 | Archaeplastida | |
| Solyc11g062110.1.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Nicotiana... | 0.05 | Archaeplastida | |
| Zm00001e034284_P001 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| Zm00001e042060_P001 | No alias | RpoC2 core component plastid-encoded RNA polymerase | 0.02 | Archaeplastida | |
| Zm00001e042169_P001 | No alias | RpoC2 core component plastid-encoded RNA polymerase | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| CC | GO:0005742 | mitochondrial outer membrane translocase complex | IEP | Neighborhood |
| CC | GO:0005743 | mitochondrial inner membrane | IEP | Neighborhood |
| CC | GO:0005840 | ribosome | IEP | Neighborhood |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006412 | translation | IEP | Neighborhood |
| BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
| BP | GO:0006839 | mitochondrial transport | IEP | Neighborhood |
| BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
| BP | GO:0017038 | protein import | IEP | Neighborhood |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0019866 | organelle inner membrane | IEP | Neighborhood |
| BP | GO:0030150 | protein import into mitochondrial matrix | IEP | Neighborhood |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044429 | mitochondrial part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| CC | GO:0044455 | mitochondrial membrane part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0044743 | protein transmembrane import into intracellular organelle | IEP | Neighborhood |
| CC | GO:0061617 | MICOS complex | IEP | Neighborhood |
| BP | GO:0065002 | intracellular protein transmembrane transport | IEP | Neighborhood |
| BP | GO:0070585 | protein localization to mitochondrion | IEP | Neighborhood |
| BP | GO:0071806 | protein transmembrane transport | IEP | Neighborhood |
| BP | GO:0072655 | establishment of protein localization to mitochondrion | IEP | Neighborhood |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
| MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
| MF | GO:0098519 | nucleotide phosphatase activity, acting on free nucleotides | IEP | Neighborhood |
| CC | GO:0098798 | mitochondrial protein complex | IEP | Neighborhood |
| CC | GO:0098799 | outer mitochondrial membrane protein complex | IEP | Neighborhood |
| CC | GO:0098800 | inner mitochondrial membrane protein complex | IEP | Neighborhood |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
| BP | GO:1990542 | mitochondrial transmembrane transport | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
| MF | GO:2001070 | starch binding | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |