1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT4G01400

AT4G01400


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink).


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000170 (SeedPlants) Phylogenetic Tree(s): OG_06_0000170_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G01400
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00259780 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00022p00130870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14580,... 0.03 Archaeplastida
AMTR_s00024p00204830 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.04 Archaeplastida
AMTR_s00029p00104100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g61870,... 0.04 Archaeplastida
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.06 Archaeplastida
AMTR_s00044p00145070 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g17525,... 0.03 Archaeplastida
AMTR_s00078p00041370 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g48810... 0.02 Archaeplastida
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.05 Archaeplastida
AMTR_s00221p00020810 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.03 Archaeplastida
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.11 Archaeplastida
GSVIVT01002056001 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.04 Archaeplastida
GSVIVT01008016001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.07 Archaeplastida
GSVIVT01024665001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.11 Archaeplastida
Gb_06545 No alias Pentatricopeptide repeat-containing protein At2g06000... 0.03 Archaeplastida
Gb_06893 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_07822 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.06 Archaeplastida
Gb_08958 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 Archaeplastida
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 Archaeplastida
Gb_14900 No alias Pentatricopeptide repeat-containing protein At4g20090... 0.05 Archaeplastida
Gb_21920 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.03 Archaeplastida
Gb_23263 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.05 Archaeplastida
Gb_37573 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.04 Archaeplastida
Gb_38399 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.04 Archaeplastida
LOC_Os01g48140.1 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 Archaeplastida
LOC_Os01g57630.2 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.06 Archaeplastida
LOC_Os01g63400.1 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 Archaeplastida
LOC_Os02g26890.1 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.04 Archaeplastida
LOC_Os05g04160.1 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 Archaeplastida
LOC_Os05g11700.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os08g39050.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.03 Archaeplastida
MA_125741g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.04 Archaeplastida
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.09 Archaeplastida
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.04 Archaeplastida
MA_17644g0010 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.04 Archaeplastida
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.03 Archaeplastida
MA_57592g0010 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.05 Archaeplastida
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.06 Archaeplastida
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.03 Archaeplastida
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.09 Archaeplastida
Solyc02g077650.2.1 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.05 Archaeplastida
Solyc05g012250.3.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.04 Archaeplastida
Solyc09g014210.3.1 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 Archaeplastida
Solyc09g061760.1.1 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.03 Archaeplastida
Zm00001e003447_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e011589_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e027557_P001 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.05 Archaeplastida
Zm00001e030818_P001 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
CC GO:0005794 Golgi apparatus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0048193 Golgi vesicle transport RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0006379 mRNA cleavage IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0007004 telomere maintenance via telomerase IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
BP GO:0007276 gamete generation IEP Neighborhood
BP GO:0009615 response to virus IEP Neighborhood
BP GO:0009616 virus induced gene silencing IEP Neighborhood
BP GO:0009688 abscisic acid biosynthetic process IEP Neighborhood
BP GO:0009790 embryo development IEP Neighborhood
BP GO:0009793 embryo development ending in seed dormancy IEP Neighborhood
BP GO:0010044 response to aluminum ion IEP Neighborhood
BP GO:0010050 vegetative phase change IEP Neighborhood
BP GO:0010216 maintenance of DNA methylation IEP Neighborhood
BP GO:0010252 auxin homeostasis IEP Neighborhood
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP Neighborhood
BP GO:0010599 production of lsiRNA involved in RNA interference IEP Neighborhood
BP GO:0010833 telomere maintenance via telomere lengthening IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0030422 production of siRNA involved in RNA interference IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031050 dsRNA fragmentation IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032504 multicellular organism reproduction IEP Neighborhood
BP GO:0032875 regulation of DNA endoreduplication IEP Neighborhood
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP Neighborhood
BP GO:0035821 modification of morphology or physiology of other organism IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0042138 meiotic DNA double-strand break formation IEP Neighborhood
BP GO:0043289 apocarotenoid biosynthetic process IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0044003 modification by symbiont of host morphology or physiology IEP Neighborhood
BP GO:0044419 interspecies interaction between organisms IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0048609 multicellular organismal reproductive process IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051607 defense response to virus IEP Neighborhood
BP GO:0051701 interaction with host IEP Neighborhood
BP GO:0051817 modification of morphology or physiology of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052018 modulation by symbiont of RNA levels in host IEP Neighborhood
BP GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0061982 meiosis I cell cycle process IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP Neighborhood
BP GO:0071897 DNA biosynthetic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0098586 cellular response to virus IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
BP GO:1902645 tertiary alcohol biosynthetic process IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 121 150
IPR002885 Pentatricopeptide_repeat 261 287
IPR002885 Pentatricopeptide_repeat 295 321
IPR013167 COG_su4 548 850
IPR002885 Pentatricopeptide_repeat 188 237
No external refs found!