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  5. Mp4g12240.1

Mp4g12240.1


Description : DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana (sp|o22907|rh24_arath : 834.0)


Gene families : OG0007523 (Archaeplastida) Phylogenetic Tree(s): OG0007523_tree ,
OG_05_0008076 (LandPlants) Phylogenetic Tree(s): OG_05_0008076_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g12240.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AT2G47330 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
Cpa|evm.model.tig00020903.17 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.02 Archaeplastida
Cre12.g522850 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.04 Archaeplastida
GSVIVT01028137001 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana 0.06 Archaeplastida
Gb_12460 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os03g19530.1 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.05 Archaeplastida
MA_50249g0010 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.02 Archaeplastida
Smo51367 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc01g079330.3.1 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e001454_P001 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e038325_P002 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005672 transcription factor TFIIA complex IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006623 protein targeting to vacuole IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072665 protein localization to vacuole IEP Neighborhood
BP GO:0072666 establishment of protein localization to vacuole IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 493 598
IPR011545 DEAD/DEAH_box_helicase_dom 282 453
No external refs found!