Mp4g14340.1

Description : subunit 1 of Pol II RNA polymerase

Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree ,
OG_05_0005403 (LandPlants) Phylogenetic Tree(s): OG_05_0005403_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp4g14340.1
Cluster	HCCA: Cluster_156

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00152770	evm_27.TU.AmTr_v1...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	Archaeplastida
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.06	Archaeplastida
AT5G60040	NRPC1	nuclear RNA polymerase C1	0.02	Archaeplastida
Cpa\|evm.model.tig00000241.15	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
Cpa\|evm.model.tig00022075.5	No alias	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cpa\|evm.model.tig00022075.6	No alias	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cre03.g165750	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
Cre16.g680900	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
GSVIVT01008740001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
GSVIVT01013491001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	Archaeplastida
GSVIVT01025079001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
Gb_21425	No alias	subunit 1 of Pol V RNA polymerase	0.02	Archaeplastida
Gb_33197	No alias	subunit 1 of Pol II RNA polymerase	0.05	Archaeplastida
LOC_Os02g05880.1	No alias	subunit 1 of Pol V RNA polymerase	0.03	Archaeplastida
LOC_Os05g05860.1	No alias	subunit 1 of Pol II RNA polymerase	0.02	Archaeplastida
MA_10436091g0010	No alias	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis...	0.03	Archaeplastida
MA_8544g0010	No alias	subunit 1 of Pol II RNA polymerase	0.03	Archaeplastida
Pp3c15_5270V3.1	No alias	nuclear RNA polymerase D1B	0.08	Archaeplastida
Pp3c17_4860V3.1	No alias	nuclear RNA polymerase C1	0.03	Archaeplastida
Pp3c1_32300V3.1	No alias	RNA polymerase II large subunit	0.04	Archaeplastida
Smo110201	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	Archaeplastida
Solyc01g096390.4.1	No alias	subunit 1 of Pol V RNA polymerase	0.04	Archaeplastida
Zm00001e007729_P001	No alias	subunit 1 of Pol III RNA polymerase	0.02	Archaeplastida
Zm00001e025206_P001	No alias	subunit 1 of Pol V RNA polymerase	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Neighborhood
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Neighborhood
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005681	spliceosomal complex	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006354	DNA-templated transcription, elongation	IEP	Neighborhood
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Neighborhood
BP	GO:0006914	autophagy	IEP	Neighborhood
CC	GO:0008023	transcription elongation factor complex	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
CC	GO:0030120	vesicle coat	IEP	Neighborhood
CC	GO:0030127	COPII vesicle coat	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Neighborhood
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Neighborhood
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
CC	GO:1902554	serine/threonine protein kinase complex	IEP	Neighborhood
CC	GO:1902911	protein kinase complex	IEP	Neighborhood
CC	GO:1990316	Atg1/ULK1 kinase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007083	RNA_pol_Rpb1_4	713	818
IPR007081	RNA_pol_Rpb1_5	825	1414
IPR000684	RNA_pol_II_repeat_euk	1664	1677
IPR000684	RNA_pol_II_repeat_euk	1594	1607
IPR000684	RNA_pol_II_repeat_euk	1734	1747
IPR000684	RNA_pol_II_repeat_euk	1706	1719
IPR000684	RNA_pol_II_repeat_euk	1650	1663
IPR000684	RNA_pol_II_repeat_euk	1692	1705
IPR000684	RNA_pol_II_repeat_euk	1748	1761
IPR000684	RNA_pol_II_repeat_euk	1755	1768
IPR000684	RNA_pol_II_repeat_euk	1608	1621
IPR000684	RNA_pol_II_repeat_euk	1678	1691
IPR000684	RNA_pol_II_repeat_euk	1622	1635
IPR000684	RNA_pol_II_repeat_euk	1741	1754
IPR000684	RNA_pol_II_repeat_euk	1538	1551
IPR000684	RNA_pol_II_repeat_euk	1552	1565
IPR000684	RNA_pol_II_repeat_euk	1580	1593
IPR000684	RNA_pol_II_repeat_euk	1566	1579
IPR000684	RNA_pol_II_repeat_euk	1636	1649
IPR000684	RNA_pol_II_repeat_euk	1727	1740
IPR007066	RNA_pol_Rpb1_3	524	687
IPR007080	RNA_pol_Rpb1_1	14	350
IPR007075	RNA_pol_Rpb1_6	891	1075
IPR000722	RNA_pol_asu	352	520
IPR007073	RNA_pol_Rpb1_7	1160	1293

External Links

No external refs found!

Mp4g14340.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation