Description : subunit 1 of Pol II RNA polymerase
Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree ,
OG_05_0005403 (LandPlants) Phylogenetic Tree(s): OG_05_0005403_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Mp4g14340.1 | |
Cluster | HCCA: Cluster_156 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00001p00152770 | evm_27.TU.AmTr_v1... | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.03 | Archaeplastida | |
AT4G35800 | RNA_POL_II_LSRNA_... | RNA polymerase II large subunit | 0.06 | Archaeplastida | |
AT5G60040 | NRPC1 | nuclear RNA polymerase C1 | 0.02 | Archaeplastida | |
Cpa|evm.model.tig00000241.15 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.02 | Archaeplastida | |
Cpa|evm.model.tig00022075.5 | No alias | DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
Cpa|evm.model.tig00022075.6 | No alias | DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
Cre03.g165750 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.02 | Archaeplastida | |
Cre16.g680900 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.02 | Archaeplastida | |
GSVIVT01008740001 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.02 | Archaeplastida | |
GSVIVT01013491001 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.03 | Archaeplastida | |
GSVIVT01025079001 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.02 | Archaeplastida | |
Gb_21425 | No alias | subunit 1 of Pol V RNA polymerase | 0.02 | Archaeplastida | |
Gb_33197 | No alias | subunit 1 of Pol II RNA polymerase | 0.05 | Archaeplastida | |
LOC_Os02g05880.1 | No alias | subunit 1 of Pol V RNA polymerase | 0.03 | Archaeplastida | |
LOC_Os05g05860.1 | No alias | subunit 1 of Pol II RNA polymerase | 0.02 | Archaeplastida | |
MA_10436091g0010 | No alias | DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis... | 0.03 | Archaeplastida | |
MA_8544g0010 | No alias | subunit 1 of Pol II RNA polymerase | 0.03 | Archaeplastida | |
Pp3c15_5270V3.1 | No alias | nuclear RNA polymerase D1B | 0.08 | Archaeplastida | |
Pp3c17_4860V3.1 | No alias | nuclear RNA polymerase C1 | 0.03 | Archaeplastida | |
Pp3c1_32300V3.1 | No alias | RNA polymerase II large subunit | 0.04 | Archaeplastida | |
Smo110201 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.03 | Archaeplastida | |
Solyc01g096390.4.1 | No alias | subunit 1 of Pol V RNA polymerase | 0.04 | Archaeplastida | |
Zm00001e007729_P001 | No alias | subunit 1 of Pol III RNA polymerase | 0.02 | Archaeplastida | |
Zm00001e025206_P001 | No alias | subunit 1 of Pol V RNA polymerase | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | transcription, DNA-templated | IEA | Interproscan |
BP | GO:0006366 | transcription by RNA polymerase II | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
MF | GO:0004672 | protein kinase activity | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
CC | GO:0005634 | nucleus | IEP | Neighborhood |
CC | GO:0005681 | spliceosomal complex | IEP | Neighborhood |
BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
BP | GO:0006354 | DNA-templated transcription, elongation | IEP | Neighborhood |
BP | GO:0006368 | transcription elongation from RNA polymerase II promoter | IEP | Neighborhood |
BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
BP | GO:0006464 | cellular protein modification process | IEP | Neighborhood |
BP | GO:0006468 | protein phosphorylation | IEP | Neighborhood |
BP | GO:0006888 | ER to Golgi vesicle-mediated transport | IEP | Neighborhood |
BP | GO:0006914 | autophagy | IEP | Neighborhood |
CC | GO:0008023 | transcription elongation factor complex | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
BP | GO:0016570 | histone modification | IEP | Neighborhood |
CC | GO:0016593 | Cdc73/Paf1 complex | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
CC | GO:0030120 | vesicle coat | IEP | Neighborhood |
CC | GO:0030127 | COPII vesicle coat | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
BP | GO:0036211 | protein modification process | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
MF | GO:0043169 | cation binding | IEP | Neighborhood |
CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
BP | GO:0043412 | macromolecule modification | IEP | Neighborhood |
BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
CC | GO:0044422 | organelle part | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
CC | GO:0044451 | nucleoplasm part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Neighborhood |
BP | GO:0061919 | process utilizing autophagic mechanism | IEP | Neighborhood |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
CC | GO:1902554 | serine/threonine protein kinase complex | IEP | Neighborhood |
CC | GO:1902911 | protein kinase complex | IEP | Neighborhood |
CC | GO:1990316 | Atg1/ULK1 kinase complex | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007083 | RNA_pol_Rpb1_4 | 713 | 818 |
IPR007081 | RNA_pol_Rpb1_5 | 825 | 1414 |
IPR000684 | RNA_pol_II_repeat_euk | 1664 | 1677 |
IPR000684 | RNA_pol_II_repeat_euk | 1594 | 1607 |
IPR000684 | RNA_pol_II_repeat_euk | 1734 | 1747 |
IPR000684 | RNA_pol_II_repeat_euk | 1706 | 1719 |
IPR000684 | RNA_pol_II_repeat_euk | 1650 | 1663 |
IPR000684 | RNA_pol_II_repeat_euk | 1692 | 1705 |
IPR000684 | RNA_pol_II_repeat_euk | 1748 | 1761 |
IPR000684 | RNA_pol_II_repeat_euk | 1755 | 1768 |
IPR000684 | RNA_pol_II_repeat_euk | 1608 | 1621 |
IPR000684 | RNA_pol_II_repeat_euk | 1678 | 1691 |
IPR000684 | RNA_pol_II_repeat_euk | 1622 | 1635 |
IPR000684 | RNA_pol_II_repeat_euk | 1741 | 1754 |
IPR000684 | RNA_pol_II_repeat_euk | 1538 | 1551 |
IPR000684 | RNA_pol_II_repeat_euk | 1552 | 1565 |
IPR000684 | RNA_pol_II_repeat_euk | 1580 | 1593 |
IPR000684 | RNA_pol_II_repeat_euk | 1566 | 1579 |
IPR000684 | RNA_pol_II_repeat_euk | 1636 | 1649 |
IPR000684 | RNA_pol_II_repeat_euk | 1727 | 1740 |
IPR007066 | RNA_pol_Rpb1_3 | 524 | 687 |
IPR007080 | RNA_pol_Rpb1_1 | 14 | 350 |
IPR007075 | RNA_pol_Rpb1_6 | 891 | 1075 |
IPR000722 | RNA_pol_asu | 352 | 520 |
IPR007073 | RNA_pol_Rpb1_7 | 1160 | 1293 |
No external refs found! |