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  5. Mp4g16380.1

Mp4g16380.1


Description : RNA helicase (Prp2)


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0006093 (LandPlants) Phylogenetic Tree(s): OG_05_0006093_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g16380.1
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00154740 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
AMTR_s00021p00166450 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
AMTR_s00090p00083520 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
AMTR_s00110p00073830 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
AT1G26370 No alias RNA helicase family protein 0.02 Archaeplastida
AT2G47250 No alias RNA helicase family protein 0.04 Archaeplastida
AT3G62310 No alias RNA helicase family protein 0.03 Archaeplastida
AT4G18465 No alias RNA helicase family protein 0.02 Archaeplastida
Cpa|evm.model.tig00000796.23 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
Cpa|evm.model.tig00021589.28 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
Cre07.g349100 No alias RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
Cre12.g520150 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
GSVIVT01003434001 No alias ATP-dependent RNA helicase DEAH11, chloroplastic... 0.02 Archaeplastida
GSVIVT01010362001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
GSVIVT01021163001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
GSVIVT01028153001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Gb_11931 No alias RNA helicase (Prp22) 0.02 Archaeplastida
Gb_13411 No alias RNA helicase (Prp16) 0.02 Archaeplastida
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Gb_22388 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
LOC_Os01g11370.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.06 Archaeplastida
LOC_Os03g19960.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Archaeplastida
LOC_Os06g09280.1 No alias RNA helicase (Prp22) 0.03 Archaeplastida
LOC_Os07g32430.1 No alias RNA helicase (Prp16) 0.02 Archaeplastida
LOC_Os11g20554.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
MA_10436572g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_277016g0010 No alias RNA helicase (Prp2) 0.02 Archaeplastida
Pp3c15_1470V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Pp3c1_18490V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3c1_9270V3.1 No alias ATP-dependent RNA helicase, putative 0.03 Archaeplastida
Pp3c23_12820V3.1 No alias RNA helicase family protein 0.04 Archaeplastida
Pp3c23_5290V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Pp3c9_18320V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3s62_10V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Smo82212 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
Solyc03g115390.4.1 No alias RNA helicase (Prp2) 0.02 Archaeplastida
Solyc04g014210.3.1 No alias E3 ubiquitin ligase (RBR-Helicase) 0.03 Archaeplastida
Solyc05g015040.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.05 Archaeplastida
Solyc09g008120.4.1 No alias RNA helicase (Prp22) 0.03 Archaeplastida
Solyc09g097820.3.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
Solyc10g076910.2.1 No alias RNA helicase (Prp16) 0.04 Archaeplastida
Solyc11g010310.2.1 No alias E3 ubiquitin ligase (RBR-Helicase) 0.02 Archaeplastida
Zm00001e001487_P003 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.04 Archaeplastida
Zm00001e014112_P001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Zm00001e016478_P002 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Zm00001e022095_P001 No alias RNA helicase (Prp2) 0.02 Archaeplastida
Zm00001e036358_P005 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Zm00001e038305_P001 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005672 transcription factor TFIIA complex IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006528 asparagine metabolic process IEP Neighborhood
BP GO:0006529 asparagine biosynthetic process IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
BP GO:0006623 protein targeting to vacuole IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008318 protein prenyltransferase activity IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016073 snRNA metabolic process IEP Neighborhood
BP GO:0016180 snRNA processing IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0018342 protein prenylation IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034472 snRNA 3'-end processing IEP Neighborhood
BP GO:0034477 U6 snRNA 3'-end processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043628 ncRNA 3'-end processing IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0072665 protein localization to vacuole IEP Neighborhood
BP GO:0072666 establishment of protein localization to vacuole IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
CC GO:0090730 Las1 complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097354 prenylation IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
CC GO:1902555 endoribonuclease complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
CC GO:1905348 endonuclease complex IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 610 735
IPR011709 DUF1605 946 1023
IPR007502 Helicase-assoc_dom 798 886
No external refs found!