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  5. AT4G02750

AT4G02750


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0007516 (Archaeplastida) Phylogenetic Tree(s): OG0007516_tree ,
OG_05_0000472 (LandPlants) Phylogenetic Tree(s): OG_05_0000472_tree ,
OG_06_0000277 (SeedPlants) Phylogenetic Tree(s): OG_06_0000277_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G02750
Cluster HCCA: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
LOC_Os09g15800.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
MA_10428421g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_110266g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_28607g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_296059g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_658463g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_7379g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Solyc03g119120.3.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Solyc04g039940.3.1 No alias Pentatricopeptide repeat-containing protein At2g35030,... 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0004407 histone deacetylase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009292 genetic transfer IEP Neighborhood
BP GO:0009294 DNA mediated transformation IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
MF GO:0019213 deacetylase activity IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
MF GO:0033558 protein deacetylase activity IEP Neighborhood
BP GO:0044764 multi-organism cellular process IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 647 771
IPR002885 Pentatricopeptide_repeat 127 156
IPR002885 Pentatricopeptide_repeat 189 212
IPR002885 Pentatricopeptide_repeat 313 342
IPR002885 Pentatricopeptide_repeat 220 248
IPR002885 Pentatricopeptide_repeat 375 404
IPR002885 Pentatricopeptide_repeat 549 572
IPR002885 Pentatricopeptide_repeat 96 125
IPR002885 Pentatricopeptide_repeat 344 372
IPR002885 Pentatricopeptide_repeat 282 311
IPR002885 Pentatricopeptide_repeat 159 187
IPR002885 Pentatricopeptide_repeat 67 92
IPR002885 Pentatricopeptide_repeat 473 521
IPR002885 Pentatricopeptide_repeat 249 275
No external refs found!