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  5. Mp5g06580.2

Mp5g06580.2


Description : chromatin remodeling factor (Snf2)


Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0001935 (LandPlants) Phylogenetic Tree(s): OG_05_0001935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g06580.2
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.05 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.03 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.04 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.03 Archaeplastida
Cpa|evm.model.tig00000983.26 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 Archaeplastida
Cpa|evm.model.tig00021623.13 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.01 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
GSVIVT01017821001 No alias No description available 0.03 Archaeplastida
GSVIVT01025216001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01026952001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Gb_01673 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os06g14406.1 No alias Chromatin structure-remodeling complex protein SYD... 0.04 Archaeplastida
MA_10429361g0010 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.04 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.02 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
Pp3c3_15820V3.1 No alias transcription regulatory protein SNF2, putative 0.02 Archaeplastida
Solyc06g065730.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0042393 histone binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 1748 1861
IPR000330 SNF2_N 1439 1721
IPR029295 SnAC 1956 2038
No external refs found!