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  5. AT4G04370

AT4G04370


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0017689 (Archaeplastida) Phylogenetic Tree(s): OG0017689_tree ,
OG_05_0017474 (LandPlants) Phylogenetic Tree(s): OG_05_0017474_tree ,
OG_06_0017024 (SeedPlants) Phylogenetic Tree(s): OG_06_0017024_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G04370
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
Solyc02g080950.3.1 No alias Pentatricopeptide repeat-containing protein At4g04370... 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004133 glycogen debranching enzyme activity IEP Neighborhood
MF GO:0004556 alpha-amylase activity IEP Neighborhood
MF GO:0004565 beta-galactosidase activity IEP Neighborhood
BP GO:0006264 mitochondrial DNA replication IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
CC GO:0009527 plastid outer membrane IEP Neighborhood
CC GO:0009707 chloroplast outer membrane IEP Neighborhood
BP GO:0010021 amylopectin biosynthetic process IEP Neighborhood
CC GO:0010368 chloroplast isoamylase complex IEP Neighborhood
MF GO:0015925 galactosidase activity IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017118 lipoyltransferase activity IEP Neighborhood
MF GO:0019156 isoamylase activity IEP Neighborhood
BP GO:0031425 chloroplast RNA processing IEP Neighborhood
BP GO:0032042 mitochondrial DNA metabolic process IEP Neighborhood
BP GO:0033258 plastid DNA metabolic process IEP Neighborhood
BP GO:0033259 plastid DNA replication IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
CC GO:0043033 isoamylase complex IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
BP GO:2000896 amylopectin metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 515 544
IPR002885 Pentatricopeptide_repeat 550 577
IPR002885 Pentatricopeptide_repeat 487 509
IPR002885 Pentatricopeptide_repeat 312 341
IPR002885 Pentatricopeptide_repeat 209 248
IPR002885 Pentatricopeptide_repeat 111 156
IPR002885 Pentatricopeptide_repeat 411 459
No external refs found!