AT4G04450 (WRKY42, AtWRKY42)

Aliases : WRKY42, AtWRKY42

Description : WRKY family transcription factor

Gene families : OG0000007 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000005 (LandPlants) Phylogenetic Tree(s): OG_05_0000005_tree ,
OG_06_0001390 (SeedPlants) Phylogenetic Tree(s): OG_06_0001390_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G04450
Cluster	HCCA: Cluster_83

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00015p00228580	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.WRKY...	0.02	Archaeplastida
AMTR_s00023p00102530	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.WRKY...	0.03	Archaeplastida
AMTR_s00032p00016380	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.WRKY...	0.02	Archaeplastida
AT1G80590	WRKY66, ATWRKY66	WRKY DNA-binding protein 66	0.03	Archaeplastida
AT2G44745	No alias	WRKY family transcription factor	0.03	Archaeplastida
GSVIVT01021397001	No alias	RNA biosynthesis.transcriptional activation.WRKY...	0.03	Archaeplastida
GSVIVT01022259001	No alias	RNA biosynthesis.transcriptional activation.WRKY...	0.03	Archaeplastida
LOC_Os01g47560.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
LOC_Os03g55080.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
LOC_Os06g06360.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
LOC_Os07g48260.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
MA_10436931g0040	No alias	transcription factor (WRKY)	0.02	Archaeplastida
MA_125146g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Pp3c4_15559V3.1	No alias	WRKY family transcription factor	0.02	Archaeplastida
Solyc01g079260.4.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc01g095100.4.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc05g055750.3.1	No alias	transcription factor (WRKY)	0.04	Archaeplastida
Solyc07g056280.3.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc07g066220.3.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc08g006320.4.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Zm00001e003146_P002	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Zm00001e006014_P001	No alias	transcription factor (WRKY)	0.02	Archaeplastida
Zm00001e019908_P001	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Zm00001e026554_P001	No alias	transcription factor (WRKY)	0.04	Archaeplastida
Zm00001e032453_P001	No alias	transcription factor (WRKY)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045892	negative regulation of transcription, DNA-templated	IMP	Interproscan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0004356	glutamate-ammonia ligase activity	IEP	Neighborhood
MF	GO:0004396	hexokinase activity	IEP	Neighborhood
MF	GO:0004448	isocitrate dehydrogenase activity	IEP	Neighborhood
MF	GO:0004449	isocitrate dehydrogenase (NAD+) activity	IEP	Neighborhood
MF	GO:0004565	beta-galactosidase activity	IEP	Neighborhood
MF	GO:0004708	MAP kinase kinase activity	IEP	Neighborhood
MF	GO:0004743	pyruvate kinase activity	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
CC	GO:0005795	Golgi stack	IEP	Neighborhood
BP	GO:0006099	tricarboxylic acid cycle	IEP	Neighborhood
BP	GO:0006101	citrate metabolic process	IEP	Neighborhood
BP	GO:0006102	isocitrate metabolic process	IEP	Neighborhood
BP	GO:0006857	oligopeptide transport	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
MF	GO:0008883	glutamyl-tRNA reductase activity	IEP	Neighborhood
BP	GO:0009555	pollen development	IEP	Neighborhood
BP	GO:0009786	regulation of asymmetric cell division	IEP	Neighborhood
MF	GO:0016211	ammonia ligase activity	IEP	Neighborhood
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Neighborhood
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	Neighborhood
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Neighborhood
BP	GO:0031329	regulation of cellular catabolic process	IEP	Neighborhood
BP	GO:0048229	gametophyte development	IEP	Neighborhood
BP	GO:0060211	regulation of nuclear-transcribed mRNA poly(A) tail shortening	IEP	Neighborhood
BP	GO:0061013	regulation of mRNA catabolic process	IEP	Neighborhood
BP	GO:1900151	regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IEP	Neighborhood
BP	GO:1903311	regulation of mRNA metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	293	350

External Links

No external refs found!

AT4G04450 (WRKY42, AtWRKY42)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation