Mp5g09990.1

Description : DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana (sp|f4i9q5|dexh7_arath : 1068.0)

Gene families : OG0000373 (Archaeplastida) Phylogenetic Tree(s): OG0000373_tree ,
OG_05_0005088 (LandPlants) Phylogenetic Tree(s): OG_05_0005088_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp5g09990.1
Cluster	HCCA: Cluster_68

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00115360	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00032p00104970	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana	0.02	Archaeplastida
AT1G06670	NIH	nuclear DEIH-boxhelicase	0.05	Archaeplastida
AT1G58060	No alias	RNA helicase family protein	0.1	Archaeplastida
AT2G01130	No alias	DEA(D/H)-box RNA helicase family protein	0.04	Archaeplastida
AT2G30800	HVT1, ATVT-1	helicase in vascular tissue and tapetum	0.04	Archaeplastida
Cpa\|evm.model.tig00021094.26	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.01	Archaeplastida
Cre03.g171650	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.01	Archaeplastida
GSVIVT01011809001	No alias	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial...	0.05	Archaeplastida
GSVIVT01022608001	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01023271001	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.09	Archaeplastida
Gb_05411	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.06	Archaeplastida
Gb_13707	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.02	Archaeplastida
Gb_37230	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.01	Archaeplastida
Gb_40990	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os01g56190.1	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os03g53760.1	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.07	Archaeplastida
LOC_Os04g35260.1	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.08	Archaeplastida
LOC_Os10g33275.1	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.04	Archaeplastida
MA_10429367g0010	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.02	Archaeplastida
MA_10432575g0010	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.1	Archaeplastida
MA_291146g0010	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.03	Archaeplastida
MA_97917g0010	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.04	Archaeplastida
Pp3c11_11510V3.1	No alias	helicase in vascular tissue and tapetum	0.04	Archaeplastida
Pp3c11_11920V3.1	No alias	RNA helicase family protein	0.07	Archaeplastida
Pp3c14_12310V3.1	No alias	RNA helicase family protein	0.04	Archaeplastida
Pp3c17_19726V3.1	No alias	RNA helicase family protein	0.02	Archaeplastida
Pp3c26_14400V3.1	No alias	RNA helicase family protein	0.1	Archaeplastida
Smo173775	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.02	Archaeplastida
Smo50132	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana	0.08	Archaeplastida
Solyc01g006970.4.1	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.04	Archaeplastida
Solyc01g103690.4.1	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.08	Archaeplastida
Solyc07g044930.3.1	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e004608_P001	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Neighborhood
BP	GO:0000726	non-recombinational repair	IEP	Neighborhood
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Neighborhood
BP	GO:0002097	tRNA wobble base modification	IEP	Neighborhood
BP	GO:0002098	tRNA wobble uridine modification	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0004402	histone acetyltransferase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Neighborhood
MF	GO:0004677	DNA-dependent protein kinase activity	IEP	Neighborhood
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005086	ARF guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005667	transcription factor complex	IEP	Neighborhood
CC	GO:0005669	transcription factor TFIID complex	IEP	Neighborhood
CC	GO:0005672	transcription factor TFIIA complex	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006302	double-strand break repair	IEP	Neighborhood
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Neighborhood
BP	GO:0006354	DNA-templated transcription, elongation	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Neighborhood
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEP	Neighborhood
BP	GO:0006401	RNA catabolic process	IEP	Neighborhood
BP	GO:0006402	mRNA catabolic process	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006473	protein acetylation	IEP	Neighborhood
BP	GO:0006475	internal protein amino acid acetylation	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
CC	GO:0008023	transcription elongation factor complex	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0009966	regulation of signal transduction	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0010646	regulation of cell communication	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
BP	GO:0016573	histone acetylation	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0018193	peptidyl-amino acid modification	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0019439	aromatic compound catabolic process	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
BP	GO:0023051	regulation of signaling	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
CC	GO:0033588	Elongator holoenzyme complex	IEP	Neighborhood
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0043543	protein acylation	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
CC	GO:0044798	nuclear transcription factor complex	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Neighborhood
BP	GO:0046700	heterocycle catabolic process	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
BP	GO:0048583	regulation of response to stimulus	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007502	Helicase-assoc_dom	1286	1387
IPR001650	Helicase_C	1094	1221
IPR011709	DUF1605	1475	1574
IPR011545	DEAD/DEAH_box_helicase_dom	810	970

External Links

No external refs found!

Mp5g09990.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation