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  5. Mp5g12560.1

Mp5g12560.1


Description : E3 ubiquitin ligase (PUB)


Gene families : OG0000227 (Archaeplastida) Phylogenetic Tree(s): OG0000227_tree ,
OG_05_0000670 (LandPlants) Phylogenetic Tree(s): OG_05_0000670_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g12560.1
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AT1G29340 ATPUB17, PUB17 plant U-box 17 0.04 Archaeplastida
AT5G01830 No alias ARM repeat superfamily protein 0.02 Archaeplastida
GSVIVT01007275001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01016225001 No alias U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_12875 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
LOC_Os02g13960.1 No alias U-box domain-containing protein 4 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os12g38210.1 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
MA_27512g0010 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
MA_9917294g0010 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
Pp3c20_16680V3.1 No alias plant U-box 13 0.02 Archaeplastida
Pp3c23_15760V3.1 No alias plant U-box 13 0.02 Archaeplastida
Pp3c23_8770V3.1 No alias plant U-box 14 0.03 Archaeplastida
Pp3c9_17047V3.1 No alias plant U-box 13 0.03 Archaeplastida
Solyc09g018230.1.1 No alias U-box domain-containing protein 16 OS=Arabidopsis... 0.03 Archaeplastida
Solyc11g008390.2.1 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
Zm00001e036734_P001 No alias E3 ubiquitin ligase (PUB) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000225 Armadillo 395 434
IPR000225 Armadillo 560 594
IPR000225 Armadillo 478 516
IPR003613 Ubox_domain 268 338
No external refs found!