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  5. Mp5g14310.1

Mp5g14310.1


Description : component Fip1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0002503 (Archaeplastida) Phylogenetic Tree(s): OG0002503_tree ,
OG_05_0002298 (LandPlants) Phylogenetic Tree(s): OG_05_0002298_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g14310.1
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00171490 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 Archaeplastida
AT5G58040 FIP1[V],... homolog of yeast FIP1 [V] 0.08 Archaeplastida
Cre17.g745547 No alias No description available 0.03 Archaeplastida
GSVIVT01023597001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 Archaeplastida
Gb_32960 No alias component Fip1 of Cleavage and Polyadenylation... 0.09 Archaeplastida
Gb_35382 No alias component Fip1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
Gb_35383 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10427720g0010 No alias FIP1[V]-like protein OS=Arabidopsis thaliana... 0.02 Archaeplastida
Pp3c11_22610V3.1 No alias homolog of yeast FIP1 [V] 0.03 Archaeplastida
Pp3c7_2840V3.1 No alias homolog of yeast FIP1 [V] 0.03 Archaeplastida
Smo441074 No alias FIP1[V]-like protein OS=Arabidopsis thaliana 0.04 Archaeplastida
Solyc07g005320.3.1 No alias component Fip1 of Cleavage and Polyadenylation... 0.06 Archaeplastida
Solyc12g099280.2.1 No alias FIP1[V]-like protein OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e005530_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e012129_P001 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007854 Fip1 485 527
No external refs found!