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  5. AT4G05000

AT4G05000 (VPS28-2, VPS28-1)


Aliases : VPS28-2, VPS28-1

Description : Vacuolar protein sorting-associated protein VPS28 family protein


Gene families : OG0004378 (Archaeplastida) Phylogenetic Tree(s): OG0004378_tree ,
OG_05_0004887 (LandPlants) Phylogenetic Tree(s): OG_05_0004887_tree ,
OG_06_0005884 (SeedPlants) Phylogenetic Tree(s): OG_06_0005884_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G05000
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
Cre16.g678100 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.03 Archaeplastida
Pp3c14_20060V3.1 No alias Vacuolar protein sorting-associated protein VPS28 family protein 0.02 Archaeplastida
Solyc02g080270.3.1 No alias component VPS28 of ESCRT-I complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex ISS Interproscan
MF GO:0005215 transporter activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006810 transport ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000303 response to superoxide IEP Neighborhood
BP GO:0000305 response to oxygen radical IEP Neighborhood
BP GO:0000578 embryonic axis specification IEP Neighborhood
MF GO:0004656 procollagen-proline 4-dioxygenase activity IEP Neighborhood
MF GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity IEP Neighborhood
MF GO:0005484 SNAP receptor activity IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
CC GO:0005778 peroxisomal membrane IEP Neighborhood
CC GO:0005779 integral component of peroxisomal membrane IEP Neighborhood
CC GO:0005795 Golgi stack IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006623 protein targeting to vacuole IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006635 fatty acid beta-oxidation IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007031 peroxisome organization IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
CC GO:0008540 proteasome regulatory particle, base subcomplex IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009062 fatty acid catabolic process IEP Neighborhood
BP GO:0009798 axis specification IEP Neighborhood
BP GO:0009942 longitudinal axis specification IEP Neighborhood
BP GO:0009945 radial axis specification IEP Neighborhood
BP GO:0009988 cell-cell recognition IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
BP GO:0016054 organic acid catabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0016559 peroxisome fission IEP Neighborhood
BP GO:0016578 histone deubiquitination IEP Neighborhood
BP GO:0018126 protein hydroxylation IEP Neighborhood
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP Neighborhood
BP GO:0019395 fatty acid oxidation IEP Neighborhood
BP GO:0019471 4-hydroxyproline metabolic process IEP Neighborhood
BP GO:0019511 peptidyl-proline hydroxylation IEP Neighborhood
MF GO:0019798 procollagen-proline dioxygenase activity IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
CC GO:0031201 SNARE complex IEP Neighborhood
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
MF GO:0031543 peptidyl-proline dioxygenase activity IEP Neighborhood
MF GO:0031545 peptidyl-proline 4-dioxygenase activity IEP Neighborhood
CC GO:0031903 microbody membrane IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034440 lipid oxidation IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
MF GO:0035064 methylated histone binding IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0044242 cellular lipid catabolic process IEP Neighborhood
CC GO:0044438 microbody part IEP Neighborhood
CC GO:0044439 peroxisomal part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046395 carboxylic acid catabolic process IEP Neighborhood
BP GO:0046519 sphingoid metabolic process IEP Neighborhood
BP GO:0046520 sphingoid biosynthetic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048508 embryonic meristem development IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071470 cellular response to osmotic stress IEP Neighborhood
BP GO:0071472 cellular response to salt stress IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072329 monocarboxylic acid catabolic process IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072665 protein localization to vacuole IEP Neighborhood
BP GO:0072666 establishment of protein localization to vacuole IEP Neighborhood
BP GO:0080173 male-female gamete recognition during double fertilization forming a zygote and endosperm IEP Neighborhood
CC GO:0098791 Golgi subcompartment IEP Neighborhood
MF GO:0140030 modification-dependent protein binding IEP Neighborhood
MF GO:0140034 methylation-dependent protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007143 Vps28 19 205
No external refs found!