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  5. Mp5g21180.1

Mp5g21180.1


Description : plant-specific E3 ubiquitin ligase (RSL/RFA)


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0000889 (LandPlants) Phylogenetic Tree(s): OG_05_0000889_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g21180.1
Cluster HCCA: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01016055001 No alias ATP-dependent RNA helicase DEAH12, chloroplastic... 0.04 Archaeplastida
Smo48392 No alias ATP-dependent RNA helicase DEAH12, chloroplastic... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 270 335
IPR002867 IBR_dom 355 401
No external refs found!