1. Home
  2. Species
  3. Marchantia polymorpha
  4. Sequence
  5. Mp5g22790.1

Mp5g22790.1


Description : component HAF/TAF1 of SAGA transcription co-activator complex. component HAF/TAF1 of TFIId basal transcription regulation complex. protein kinase (TAF)


Gene families : OG0002996 (Archaeplastida) Phylogenetic Tree(s): OG0002996_tree ,
OG_05_0003348 (LandPlants) Phylogenetic Tree(s): OG_05_0003348_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g22790.1
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00132750 evm_27.TU.AmTr_v1... Protein modification.phosphorylation.atypical kinase... 0.03 Archaeplastida
AT1G32750 HAF01, HAC13,... HAC13 protein (HAC13) 0.13 Archaeplastida
Cpa|evm.model.tig00020903.20 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Cre10.g425501 No alias Transcription initiation factor TFIID subunit 1 OS=Oryza... 0.05 Archaeplastida
GSVIVT01020528001 No alias Protein modification.phosphorylation.atypical kinase... 0.09 Archaeplastida
Gb_10677 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.18 Archaeplastida
LOC_Os06g43790.1 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.04 Archaeplastida
MA_10432545g0010 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.02 Archaeplastida
MA_10432545g0020 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.03 Archaeplastida
Pp3c10_350V3.1 No alias HAC13 protein (HAC13) 0.11 Archaeplastida
Pp3c14_1870V3.1 No alias HAC13 protein (HAC13) 0.11 Archaeplastida
Smo409957 No alias Protein modification.phosphorylation.atypical kinase... 0.07 Archaeplastida
Solyc07g006820.4.1 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.08 Archaeplastida
Zm00001e037464_P001 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001487 Bromodomain 1969 2042
IPR022591 TFIID_sub1_DUF3591 634 1206
IPR009067 TAF_II_230-bd 26 69
IPR000626 Ubiquitin_dom 720 790
No external refs found!