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  5. Mp6g04810.1

Mp6g04810.1


Description : E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana (sp|q8le94|ring3_arath : 91.7)


Gene families : OG0000951 (Archaeplastida) Phylogenetic Tree(s): OG0000951_tree ,
OG_05_0000709 (LandPlants) Phylogenetic Tree(s): OG_05_0000709_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp6g04810.1
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
AT4G23450 AtAIRP1, AIRP1 RING/U-box superfamily protein 0.05 Archaeplastida
GSVIVT01019385001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01027002001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01036545001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_03287 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_15374 No alias E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os10g05230.2 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.03 Archaeplastida
Solyc08g081300.4.1 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.03 Archaeplastida
Zm00001e002639_P004 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.03 Archaeplastida
Zm00001e004969_P001 No alias E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e012916_P001 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.03 Archaeplastida
Zm00001e016257_P003 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 136 177
No external refs found!