1. Home
  2. Species
  3. Marchantia polymorpha
  4. Sequence
  5. Mp6g08160.1

Mp6g08160.1


Description : RNA chaperone (RZ1|GR-RBP)


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000481 (LandPlants) Phylogenetic Tree(s): OG_05_0000481_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp6g08160.1
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AT5G19030 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Cpa|evm.model.tig00000826.12 No alias Glycine-rich RNA-binding protein 4, mitochondrial... 0.02 Archaeplastida
Cre02.g079400 No alias No description available 0.03 Archaeplastida
Cre17.g729150 No alias No description available 0.05 Archaeplastida
Gb_40269 No alias RNA chaperone (RZ1|GR-RBP) 0.07 Archaeplastida
MA_168323g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
MA_872107g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc10g047130.2.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
Solyc11g008210.3.1 No alias Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 121 136
IPR000504 RRM_dom 10 78
No external refs found!