AT4G08940

Description : Ubiquitin carboxyl-terminal hydrolase family protein

Gene families : OG0001104 (Archaeplastida) Phylogenetic Tree(s): OG0001104_tree ,
OG_05_0010094 (LandPlants) Phylogenetic Tree(s): OG_05_0010094_tree ,
OG_06_0008344 (SeedPlants) Phylogenetic Tree(s): OG_06_0008344_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G08940
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
Gb_34809	No alias	WTF1 plastidial RNA basal splicing factor	0.03	Archaeplastida
LOC_Os09g29760.1	No alias	Protein WHATS THIS FACTOR 1 OS=Zea mays...	0.03	Archaeplastida
Smo422954	No alias	Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa...	0.05	Archaeplastida
Solyc01g079430.2.1	No alias	Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis...	0.04	Archaeplastida
Solyc04g074280.1.1	No alias	Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa...	0.05	Archaeplastida
Zm00001e026570_P001	No alias	WTF1 plastidial RNA basal splicing factor	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006812	cation transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006865	amino acid transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	IMP	Interproscan
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0015711	organic anion transport	None	Extended
BP	GO:0015804	neutral amino acid transport	None	Extended
BP	GO:0015824	proline transport	RCA	Interproscan
BP	GO:0015849	organic acid transport	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046942	carboxylic acid transport	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000808	origin recognition complex	IEP	Neighborhood
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005739	mitochondrion	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006301	postreplication repair	IEP	Neighborhood
BP	GO:0006342	chromatin silencing	IEP	Neighborhood
BP	GO:0006346	methylation-dependent chromatin silencing	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	Neighborhood
BP	GO:0009615	response to virus	IEP	Neighborhood
BP	GO:0009616	virus induced gene silencing	IEP	Neighborhood
BP	GO:0010267	production of ta-siRNAs involved in RNA interference	IEP	Neighborhood
CC	GO:0010369	chromocenter	IEP	Neighborhood
MF	GO:0010385	double-stranded methylated DNA binding	IEP	Neighborhood
BP	GO:0030422	production of siRNA involved in RNA interference	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
BP	GO:0031050	dsRNA fragmentation	IEP	Neighborhood
MF	GO:0033549	MAP kinase phosphatase activity	IEP	Neighborhood
CC	GO:0034708	methyltransferase complex	IEP	Neighborhood
CC	GO:0035097	histone methyltransferase complex	IEP	Neighborhood
BP	GO:0035196	production of miRNAs involved in gene silencing by miRNA	IEP	Neighborhood
BP	GO:0035821	modification of morphology or physiology of other organism	IEP	Neighborhood
BP	GO:0043405	regulation of MAP kinase activity	IEP	Neighborhood
BP	GO:0043408	regulation of MAPK cascade	IEP	Neighborhood
BP	GO:0044003	modification by symbiont of host morphology or physiology	IEP	Neighborhood
BP	GO:0044419	interspecies interaction between organisms	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	Neighborhood
CC	GO:0048188	Set1C/COMPASS complex	IEP	Neighborhood
BP	GO:0051607	defense response to virus	IEP	Neighborhood
BP	GO:0051701	interaction with host	IEP	Neighborhood
BP	GO:0051817	modification of morphology or physiology of other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052018	modulation by symbiont of RNA levels in host	IEP	Neighborhood
BP	GO:0052249	modulation of RNA levels in other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0070918	production of small RNA involved in gene silencing by RNA	IEP	Neighborhood
BP	GO:0080156	mitochondrial mRNA modification	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0098586	cellular response to virus	IEP	Neighborhood
CC	GO:0098687	chromosomal region	IEP	Neighborhood
BP	GO:1900864	mitochondrial RNA modification	IEP	Neighborhood
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR021099	PORR_domain	67	389

External Links

No external refs found!

AT4G08940

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation