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  5. AT4G09190

AT4G09190


Description : F-box and associated interaction domains-containing protein


Gene families : OG0000466 (Archaeplastida) Phylogenetic Tree(s): OG0000466_tree ,
OG_05_0000239 (LandPlants) Phylogenetic Tree(s): OG_05_0000239_tree ,
OG_06_0000111 (SeedPlants) Phylogenetic Tree(s): OG_06_0000111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G09190
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AT1G23037 No alias F-box associated ubiquitination effector family protein 0.02 Archaeplastida
AT1G30790 No alias F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT1G32660 No alias F-box and associated interaction domains-containing protein 0.06 Archaeplastida
AT1G46840 No alias F-box family protein 0.06 Archaeplastida
AT1G48060 No alias F-box and associated interaction domains-containing protein 0.02 Archaeplastida
AT1G53815 No alias F-box family protein 0.03 Archaeplastida
AT1G60370 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida
AT1G67130 No alias F-box family protein 0.06 Archaeplastida
AT3G47150 No alias F-box and associated interaction domains-containing protein 0.02 Archaeplastida
AT3G52320 No alias F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT4G38870 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT5G15670 No alias F-box family protein 0.02 Archaeplastida
AT5G18160 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida
AT5G44345 No alias F-box associated ubiquitination effector family protein 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004356 glutamate-ammonia ligase activity IEP Neighborhood
MF GO:0004396 hexokinase activity IEP Neighborhood
MF GO:0004448 isocitrate dehydrogenase activity IEP Neighborhood
MF GO:0004449 isocitrate dehydrogenase (NAD+) activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005795 Golgi stack IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006102 isocitrate metabolic process IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0031329 regulation of cellular catabolic process IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
BP GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening IEP Neighborhood
BP GO:0061013 regulation of mRNA catabolic process IEP Neighborhood
BP GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEP Neighborhood
BP GO:1903311 regulation of mRNA metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 22 58
IPR013187 F-box-assoc_dom_typ3 209 318
No external refs found!