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Description : plastidial ribosome biogenesis factor (PAC)
Gene families : OG0007586 (Archaeplastida) Phylogenetic Tree(s): OG0007586_tree ,
OG_05_0008149 (LandPlants) Phylogenetic Tree(s): OG_05_0008149_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp6g13250.1 | |
| Cluster | HCCA: Cluster_110 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| GSVIVT01011095001 | No alias | Protein biosynthesis.organelle translation... | 0.02 | Archaeplastida | |
| Solyc09g064790.3.1 | No alias | plastidial ribosome biogenesis factor (PAC) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000176 | nuclear exosome (RNase complex) | IEP | Neighborhood |
| CC | GO:0000178 | exosome (RNase complex) | IEP | Neighborhood |
| BP | GO:0001510 | RNA methylation | IEP | Neighborhood |
| MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
| MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
| MF | GO:0004797 | thymidine kinase activity | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| MF | GO:0005525 | GTP binding | IEP | Neighborhood |
| CC | GO:0005840 | ribosome | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006188 | IMP biosynthetic process | IEP | Neighborhood |
| BP | GO:0006189 | 'de novo' IMP biosynthetic process | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
| BP | GO:0006412 | translation | IEP | Neighborhood |
| BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006771 | riboflavin metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0008033 | tRNA processing | IEP | Neighborhood |
| BP | GO:0008152 | metabolic process | IEP | Neighborhood |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008175 | tRNA methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Neighborhood |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008703 | 5-amino-6-(5-phosphoribosylamino)uracil reductase activity | IEP | Neighborhood |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Neighborhood |
| BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016426 | tRNA (adenine) methyltransferase activity | IEP | Neighborhood |
| MF | GO:0016429 | tRNA (adenine-N1-)-methyltransferase activity | IEP | Neighborhood |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0019136 | deoxynucleoside kinase activity | IEP | Neighborhood |
| MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | Neighborhood |
| MF | GO:0019206 | nucleoside kinase activity | IEP | Neighborhood |
| BP | GO:0030258 | lipid modification | IEP | Neighborhood |
| BP | GO:0030259 | lipid glycosylation | IEP | Neighborhood |
| BP | GO:0030488 | tRNA methylation | IEP | Neighborhood |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | Neighborhood |
| MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
| BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
| CC | GO:0034708 | methyltransferase complex | IEP | Neighborhood |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | Neighborhood |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0044255 | cellular lipid metabolic process | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| BP | GO:0046040 | IMP metabolic process | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0070085 | glycosylation | IEP | Neighborhood |
| MF | GO:0070569 | uridylyltransferase activity | IEP | Neighborhood |
| BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
| CC | GO:1905354 | exoribonuclease complex | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |