Mp6g17130.1

Description : snRNP-associated protein (SR140)

Gene families : OG0002273 (Archaeplastida) Phylogenetic Tree(s): OG0002273_tree ,
OG_05_0001842 (LandPlants) Phylogenetic Tree(s): OG_05_0001842_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp6g17130.1
Cluster	HCCA: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00064p00173090	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.U2-type-intron-specific...	0.04	Archaeplastida
AT5G25060	No alias	RNA recognition motif (RRM)-containing protein	0.02	Archaeplastida
Cre03.g158150	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	Archaeplastida
GSVIVT01035985001	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.06	Archaeplastida
Gb_18824	No alias	snRNP-associated protein (SR140)	0.01	Archaeplastida
LOC_Os02g08360.1	No alias	snRNP-associated protein (SR140)	0.02	Archaeplastida
MA_10433879g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_1061g0010	No alias	no hits & (original description: none)	0.01	Archaeplastida
MA_42847g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
MA_61503g0010	No alias	No annotation	0.03	Archaeplastida
Pp3c23_11510V3.1	No alias	RNA recognition motif (RRM)-containing protein	0.03	Archaeplastida
Pp3c24_10060V3.1	No alias	RNA recognition motif (RRM)-containing protein	0.02	Archaeplastida
Solyc03g025280.4.1	No alias	snRNP-associated protein (SR140)	0.05	Archaeplastida
Zm00001e013823_P001	No alias	snRNP-associated protein (SR140)	0.03	Archaeplastida
Zm00001e013828_P003	No alias	snRNP-associated protein (SR140)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Neighborhood
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Neighborhood
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Neighborhood
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Neighborhood
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Neighborhood
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005681	spliceosomal complex	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0006401	RNA catabolic process	IEP	Neighborhood
BP	GO:0006402	mRNA catabolic process	IEP	Neighborhood
BP	GO:0006476	protein deacetylation	IEP	Neighborhood
MF	GO:0008134	transcription factor binding	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
BP	GO:0016575	histone deacetylation	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0017025	TBP-class protein binding	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0019439	aromatic compound catabolic process	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Neighborhood
BP	GO:0035601	protein deacylation	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
BP	GO:0043248	proteasome assembly	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Neighborhood
BP	GO:0046700	heterocycle catabolic process	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
MF	GO:0060090	molecular adaptor activity	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0098732	macromolecule deacylation	IEP	Neighborhood
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000061	Surp	366	418
IPR000504	RRM_dom	218	290

External Links

No external refs found!

Mp6g17130.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation