Description : large subunit of U2AF pre-RNA splicing auxiliary factor complex
Gene families : OG0000654 (Archaeplastida) Phylogenetic Tree(s): OG0000654_tree ,
OG_05_0001447 (LandPlants) Phylogenetic Tree(s): OG_05_0001447_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Mp6g18430.1 | |
Cluster | HCCA: Cluster_22 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000383.37 | No alias | Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia | 0.01 | Archaeplastida | |
Cpa|evm.model.tig00021464.4 | No alias | No description available | 0.01 | Archaeplastida | |
Cre09.g391949 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.04 | Archaeplastida | |
GSVIVT01018993001 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.04 | Archaeplastida | |
GSVIVT01027871001 | No alias | Splicing factor U2af large subunit A OS=Arabidopsis thaliana | 0.05 | Archaeplastida | |
Gb_32245 | No alias | Splicing factor U2af large subunit A OS=Triticum... | 0.02 | Archaeplastida | |
LOC_Os03g04520.2 | No alias | Splicing factor U2af large subunit B OS=Nicotiana... | 0.02 | Archaeplastida | |
MA_10110465g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
MA_10429502g0010 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.05 | Archaeplastida | |
MA_9595064g0010 | No alias | Splicing factor U2af large subunit B OS=Arabidopsis... | 0.03 | Archaeplastida | |
MA_96898g0010 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.03 | Archaeplastida | |
Pp3c10_9710V3.1 | No alias | U2 snRNP auxilliary factor, large subunit, splicing factor | 0.03 | Archaeplastida | |
Pp3c14_9430V3.1 | No alias | U2 snRNP auxilliary factor, large subunit, splicing factor | 0.03 | Archaeplastida | |
Pp3c25_5610V3.1 | No alias | U2 snRNP auxilliary factor, large subunit, splicing factor | 0.07 | Archaeplastida | |
Smo13030 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | Archaeplastida | |
Smo160385 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.04 | Archaeplastida | |
Solyc02g062920.3.1 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.03 | Archaeplastida | |
Solyc02g085570.4.1 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.04 | Archaeplastida | |
Solyc09g090420.4.1 | No alias | Splicing factor U2af large subunit B OS=Oryza sativa... | 0.05 | Archaeplastida | |
Solyc12g008750.3.1 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.04 | Archaeplastida | |
Zm00001e021000_P006 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.02 | Archaeplastida | |
Zm00001e021119_P005 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.03 | Archaeplastida | |
Zm00001e038951_P001 | No alias | Splicing factor U2af large subunit A OS=Nicotiana... | 0.07 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Neighborhood |
MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
CC | GO:0005634 | nucleus | IEP | Neighborhood |
CC | GO:0005681 | spliceosomal complex | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
BP | GO:0006476 | protein deacetylation | IEP | Neighborhood |
BP | GO:0006612 | protein targeting to membrane | IEP | Neighborhood |
BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Neighborhood |
BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Neighborhood |
MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
MF | GO:0008312 | 7S RNA binding | IEP | Neighborhood |
BP | GO:0009143 | nucleoside triphosphate catabolic process | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
BP | GO:0016575 | histone deacetylation | IEP | Neighborhood |
MF | GO:0016859 | cis-trans isomerase activity | IEP | Neighborhood |
MF | GO:0030145 | manganese ion binding | IEP | Neighborhood |
CC | GO:0033643 | host cell part | IEP | Neighborhood |
CC | GO:0033646 | host intracellular part | IEP | Neighborhood |
CC | GO:0033647 | host intracellular organelle | IEP | Neighborhood |
CC | GO:0033648 | host intracellular membrane-bounded organelle | IEP | Neighborhood |
BP | GO:0035601 | protein deacylation | IEP | Neighborhood |
CC | GO:0042025 | host cell nucleus | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043169 | cation binding | IEP | Neighborhood |
CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
BP | GO:0043248 | proteasome assembly | IEP | Neighborhood |
CC | GO:0044217 | other organism part | IEP | Neighborhood |
BP | GO:0045047 | protein targeting to ER | IEP | Neighborhood |
MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
MF | GO:0047429 | nucleoside-triphosphate diphosphatase activity | IEP | Neighborhood |
CC | GO:0048500 | signal recognition particle | IEP | Neighborhood |
MF | GO:0060090 | molecular adaptor activity | IEP | Neighborhood |
BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Neighborhood |
BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Neighborhood |
BP | GO:0072657 | protein localization to membrane | IEP | Neighborhood |
BP | GO:0090150 | establishment of protein localization to membrane | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
BP | GO:0098732 | macromolecule deacylation | IEP | Neighborhood |
No external refs found! |