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  5. Mp6g20400.1

Mp6g20400.1


Description : siRNA-integrating factor (AGO)


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0001060 (LandPlants) Phylogenetic Tree(s): OG_05_0001060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp6g20400.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00083p00065730 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT1G31290 AGO3 ARGONAUTE 3 0.03 Archaeplastida
AT5G43810 PNH, AGO10, ZLL Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Archaeplastida
Cpa|evm.model.tig00020961.9 No alias Protein argonaute 18 OS=Oryza sativa subsp. japonica 0.01 Archaeplastida
GSVIVT01001941001 No alias Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
GSVIVT01012490001 No alias Protein argonaute 7 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01012529001 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
GSVIVT01030512001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
LOC_Os02g40320.1 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
LOC_Os03g57560.1 No alias Protein argonaute 13 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os04g52540.1 No alias siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.02 Archaeplastida
LOC_Os07g28850.1 No alias Protein argonaute 18 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_158278g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c19_20670V3.1 No alias Argonaute family protein 0.03 Archaeplastida
Solyc01g096750.1.1 No alias siRNA-integrating factor (AGO) 0.04 Archaeplastida
Solyc09g082830.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
Zm00001e004497_P001 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e012276_P001 No alias Protein argonaute 12 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e017367_P001 No alias siRNA-integrating factor (AGO) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
InterPro domains Description Start Stop
IPR032474 Argonaute_N 51 184
IPR032472 ArgoL2 391 437
IPR014811 ArgoL1 199 245
IPR003100 PAZ_dom 253 379
IPR003165 Piwi 548 862
No external refs found!