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  5. Mp6g21490.1

Mp6g21490.1


Description : no hits & (original description: none)


Gene families : OG0001479 (Archaeplastida) Phylogenetic Tree(s): OG0001479_tree ,
OG_05_0001081 (LandPlants) Phylogenetic Tree(s): OG_05_0001081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp6g21490.1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00108130 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.03 Archaeplastida
AMTR_s00145p00090170 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.03 Archaeplastida
AMTR_s00626p00011520 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase subunit beta OS=Morus indica 0.03 Archaeplastida
AMTR_s01499p00009870 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.03 Archaeplastida
ATCG00190 RPOB RNA polymerase subunit beta 0.08 Archaeplastida
GSVIVT01035251001 No alias DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.02 Archaeplastida
Gb_02251 No alias RpoB core component plastid-encoded RNA polymerase 0.1 Archaeplastida
Gb_06830 No alias DNA-directed RNA polymerase subunit beta OS=Pinus... 0.1 Archaeplastida
Gb_09029 No alias DNA-directed RNA polymerase subunit beta OS=Cycas... 0.08 Archaeplastida
Gb_09771 No alias DNA-directed RNA polymerase subunit beta OS=Pinus... 0.02 Archaeplastida
LOC_Os04g16820.1 No alias RpoB core component plastid-encoded RNA polymerase 0.05 Archaeplastida
LOC_Os05g22830.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.1 Archaeplastida
LOC_Os05g22860.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.12 Archaeplastida
Smo236845 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 Archaeplastida
Smo237022 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 Archaeplastida
Smo237023 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 Archaeplastida
Solyc00g500053.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.09 Archaeplastida
Solyc01g095950.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.09 Archaeplastida
Solyc02g067590.2.1 No alias DNA-directed RNA polymerase subunit beta OS=Liriodendron... 0.09 Archaeplastida
Solyc08g028750.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc10g017920.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.1 Archaeplastida
Solyc12g035790.2.1 No alias regulatory component YCF2 of AAA-ATPase motor complex 0.09 Archaeplastida
Solyc12g035870.3.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.1 Archaeplastida
Zm00001e042040_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e042070_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e042106_P001 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!