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  5. Mp7g00250.1

Mp7g00250.1


Description : RNA helicase (Brr2)


Gene families : OG0000989 (Archaeplastida) Phylogenetic Tree(s): OG0000989_tree ,
OG_05_0001451 (LandPlants) Phylogenetic Tree(s): OG_05_0001451_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g00250.1
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00146400 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH14... 0.08 Archaeplastida
AT5G61140 No alias U5 small nuclear ribonucleoprotein helicase 0.05 Archaeplastida
Cpa|evm.model.tig00000865.28 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.02 Archaeplastida
Cre17.g744147 No alias RNA processing.RNA splicing.spliceosome... 0.01 Archaeplastida
GSVIVT01007875001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.07 Archaeplastida
GSVIVT01010769001 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.03 Archaeplastida
Gb_18049 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 Archaeplastida
LOC_Os03g11470.1 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida
MA_10429486g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 Archaeplastida
MA_10434882g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida
MA_81219g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_81219g0020 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.09 Archaeplastida
MA_81219g0030 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.03 Archaeplastida
MA_823844g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 Archaeplastida
MA_930633g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 Archaeplastida
Pp3c1_35880V3.1 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.03 Archaeplastida
Pp3c2_9850V3.1 No alias U5 small nuclear ribonucleoprotein helicase 0.07 Archaeplastida
Smo178863 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.06 Archaeplastida
Smo410613 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida
Solyc06g069480.3.1 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 Archaeplastida
Zm00001e038727_P001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000723 telomere maintenance IEP Neighborhood
CC GO:0000781 chromosome, telomeric region IEP Neighborhood
CC GO:0000784 nuclear chromosome, telomeric region IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0035596 methylthiotransferase activity IEP Neighborhood
CC GO:0035658 Mon1-Ccz1 complex IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 1115 1280
IPR004179 Sec63-dom 1597 1909
IPR001650 Helicase_C 1393 1478
IPR001650 Helicase_C 497 641
IPR011545 DEAD/DEAH_box_helicase_dom 266 439
IPR004179 Sec63-dom 765 1071
No external refs found!