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  5. Mp7g11300.1

Mp7g11300.1


Description : Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana (sp|q9lfq3|snl2_arath : 139.0)


Gene families : OG0000780 (Archaeplastida) Phylogenetic Tree(s): OG0000780_tree ,
OG_05_0074529 (LandPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g11300.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT1G10450 SNL6 SIN3-like 6 0.05 Archaeplastida
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.04 Archaeplastida
AT3G01320 SNL1 SIN3-like 1 0.02 Archaeplastida
AT5G15020 SNL2 SIN3-like 2 0.04 Archaeplastida
Cre03.g180800 No alias Paired amphipathic helix protein Sin3-like 4... 0.02 Archaeplastida
GSVIVT01020136001 No alias Chromatin organisation.histone modifications.histone... 0.03 Archaeplastida
GSVIVT01032579001 No alias Chromatin organisation.histone modifications.histone... 0.04 Archaeplastida
Gb_35988 No alias component SNL of histone deacetylase machineries 0.04 Archaeplastida
MA_18241g0010 No alias component SNL of histone deacetylase machineries 0.04 Archaeplastida
Pp3c24_13770V3.1 No alias SIN3-like 3 0.02 Archaeplastida
Pp3c24_16180V3.1 No alias SIN3-like 4 0.02 Archaeplastida
Pp3c8_19010V3.1 No alias SIN3-like 4 0.05 Archaeplastida
Solyc02g067570.3.1 No alias component SNL of histone deacetylase machineries 0.03 Archaeplastida
Solyc02g087360.4.1 No alias component SNL of histone deacetylase machineries 0.02 Archaeplastida
Zm00001e017111_P002 No alias component SNL of histone deacetylase machineries 0.02 Archaeplastida
Zm00001e025644_P001 No alias component SNL of histone deacetylase machineries 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013194 HDAC_interact_dom 326 421
IPR003822 PAH 62 106
No external refs found!