Mp7g12350.1


Description : polynucleotide phosphorylase (PNP)


Gene families : OG0001869 (Archaeplastida) Phylogenetic Tree(s): OG0001869_tree ,
OG_05_0002404 (LandPlants) Phylogenetic Tree(s): OG_05_0002404_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g12350.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00113p00140210 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.ribonuclease... 0.03 Archaeplastida
AT5G14580 No alias polyribonucleotide nucleotidyltransferase, putative 0.11 Archaeplastida
Cpa|evm.model.tig00020603.85 No alias RNA processing.organelle machineries.ribonuclease... 0.03 Archaeplastida
Cpa|evm.model.tig00020603.86 No alias RNA processing.organelle machineries.ribonuclease... 0.02 Archaeplastida
Cre04.g214501 No alias RNA processing.organelle machineries.ribonuclease... 0.02 Archaeplastida
GSVIVT01032436001 No alias RNA processing.organelle machineries.ribonuclease... 0.1 Archaeplastida
Gb_20425 No alias polynucleotide phosphorylase (PNP) 0.05 Archaeplastida
MA_10427258g0020 No alias polynucleotide phosphorylase (PNP) 0.03 Archaeplastida
MA_10432723g0020 No alias polynucleotide phosphorylase (PNP) 0.05 Archaeplastida
MA_10434926g0010 No alias Polyribonucleotide nucleotidyltransferase 2,... 0.07 Archaeplastida
Pp3c1_22150V3.1 No alias polyribonucleotide nucleotidyltransferase, putative 0.01 Archaeplastida
Pp3c2_19900V3.1 No alias polyribonucleotide nucleotidyltransferase, putative 0.02 Archaeplastida
Smo84724 No alias RNA processing.organelle machineries.ribonuclease... 0.09 Archaeplastida
Solyc02g086600.3.1 No alias polynucleotide phosphorylase (PNP) 0.14 Archaeplastida
Zm00001e015113_P001 No alias polynucleotide phosphorylase (PNP) 0.13 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003911 DNA ligase (NAD+) activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0005347 ATP transmembrane transporter activity IEP Neighborhood
MF GO:0005471 ATP:ADP antiporter activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006862 nucleotide transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008514 organic anion transmembrane transporter activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0015215 nucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0015217 ADP transmembrane transporter activity IEP Neighborhood
MF GO:0015238 drug transmembrane transporter activity IEP Neighborhood
MF GO:0015301 anion:anion antiporter activity IEP Neighborhood
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Neighborhood
BP GO:0015748 organophosphate ester transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:0099516 ion antiporter activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 226 289
IPR003029 S1_domain 708 779
IPR001247 ExoRNase_PH_dom1 404 537
IPR001247 ExoRNase_PH_dom1 94 223
IPR015848 PNPase_PH_RNA-bd_bac/org-type 321 401
IPR004088 KH_dom_type_1 646 701
No external refs found!