AT4G11360 (RHA1B)

Aliases : RHA1B

Description : RING-H2 finger A1B

Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0026606 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0025016 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G11360
Cluster	HCCA: Cluster_150

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00267830	evm_27.TU.AmTr_v1...	Nutrient uptake.iron uptake.regulation.IDF1 IRT1-ubiquitin ligase	0.03	Archaeplastida
AMTR_s00007p00056710	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
AMTR_s00025p00229930	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
AMTR_s00030p00032810	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.08	Archaeplastida
AT1G04360	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT1G15100	RHA2A	RING-H2 finger A2A	0.05	Archaeplastida
AT1G49220	No alias	RING/U-box superfamily protein	0.06	Archaeplastida
AT1G63840	No alias	RING/U-box superfamily protein	0.05	Archaeplastida
AT2G37580	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT2G42360	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT3G43430	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT4G09100	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
AT5G05280	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
AT5G53110	No alias	RING/U-box superfamily protein	0.05	Archaeplastida
AT5G66070	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
GSVIVT01023776001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.06	Archaeplastida
GSVIVT01024698001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01027769001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
GSVIVT01038717001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Gb_14778	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Gb_14821	No alias	RHA2 signal transducer of abscisic acid perception	0.06	Archaeplastida
Gb_15297	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Gb_20700	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os01g64620.1	No alias	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os02g45390.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os02g45780.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os02g50930.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
LOC_Os02g52210.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os03g22110.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os05g36310.1	No alias	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os06g34650.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os07g06560.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
LOC_Os08g43670.1	No alias	NEP1-interacting protein 2 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os11g05300.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os12g24490.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_1115518g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_377006g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_63503g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_786911g0010	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Mp1g19680.1	No alias	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Smo172324	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
Smo417984	No alias	No description available	0.04	Archaeplastida
Smo438800	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.07	Archaeplastida
Solyc02g038805.1.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Solyc02g082420.3.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc05g055390.3.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Solyc08g081370.1.1	No alias	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis...	0.06	Archaeplastida
Solyc09g010650.1.1	No alias	RING-H2 finger protein ATL33 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc11g005290.1.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc11g005300.2.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc12g087840.1.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Zm00001e000398_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e002272_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e008560_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e013809_P001	No alias	no hits & (original description: none)	0.06	Archaeplastida
Zm00001e021729_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e022781_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e023585_P001	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Zm00001e029032_P001	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Zm00001e030136_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e030930_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e034421_P001	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Zm00001e035560_P001	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010200	response to chitin	IEP	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0016567	protein ubiquitination	IDA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042493	response to drug	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005773	vacuole	IEP	Neighborhood
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Neighborhood
BP	GO:0007568	aging	IEP	Neighborhood
MF	GO:0008805	carbon-monoxide oxygenase activity	IEP	Neighborhood
BP	GO:0009825	multidimensional cell growth	IEP	Neighborhood
BP	GO:0010150	leaf senescence	IEP	Neighborhood
BP	GO:0010260	animal organ senescence	IEP	Neighborhood
MF	GO:0016622	oxidoreductase activity, acting on the aldehyde or oxo group of donors, cytochrome as acceptor	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Neighborhood
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0047807	cytokinin 7-beta-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0080062	cytokinin 9-beta-glucosyltransferase activity	IEP	Neighborhood
BP	GO:0090693	plant organ senescence	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	84	129

External Links

No external refs found!

AT4G11360 (RHA1B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation