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  5. Mp7g15050.1

Mp7g15050.1


Description : pre-mRNA splicing factor (SF1)


Gene families : OG0001047 (Archaeplastida) Phylogenetic Tree(s): OG0001047_tree ,
OG_05_0001290 (LandPlants) Phylogenetic Tree(s): OG_05_0001290_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g15050.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00155240 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
AT5G51300 No alias splicing factor-related 0.06 Archaeplastida
Cpa|evm.model.tig00001154.10 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 Archaeplastida
Cre09.g386731 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 Archaeplastida
GSVIVT01014212001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 Archaeplastida
Gb_19921 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
Gb_41039 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
LOC_Os04g31620.1 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
LOC_Os08g01070.2 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10426554g0020 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
MA_10432977g0010 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
MA_11962g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_11962g0020 No alias pre-mRNA splicing factor (SF1) 0.05 Archaeplastida
MA_12875g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_15045g0010 No alias pre-mRNA splicing factor (SF1) 0.05 Archaeplastida
MA_160895g0010 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
MA_8555g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Pp3c11_24710V3.1 No alias splicing factor-related 0.05 Archaeplastida
Pp3c7_10890V3.1 No alias splicing factor-related 0.06 Archaeplastida
Zm00001e008383_P001 No alias pre-mRNA splicing factor (SF1) 0.06 Archaeplastida
Zm00001e040741_P001 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
CC GO:0000124 SAGA complex IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR032570 SF1-HH 229 344
IPR000504 RRM_dom 701 769
IPR004088 KH_dom_type_1 363 436
No external refs found!